BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0459.0013.p
         (82 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr7009 [L] COG1943 Transposase and inactivated derivatives            62   2e-10
VNG0043H [L] COG1943 Transposase and inactivated derivatives           62   2e-10
HP1008 [L] COG1943 Transposase and inactivated derivatives             56   1e-08
HP0414 [L] COG1943 Transposase and inactivated derivatives             56   1e-08
DR1652 [L] COG1943 Transposase and inactivated derivatives             55   2e-08

>alr7009 [L] COG1943 Transposase and inactivated derivatives
          Length = 359

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 2/83 (2%), Positives = 9/83 (10%), Gaps = 1/83 (1%)

Query: 1   VIFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPI-IR 59
                                +    L        +      + +     I  +      
Sbjct: 40  HGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAV 99

Query: 60  QQLWKEYFWSRSYCLLTTGGGPI 82
               +      +           
Sbjct: 100 HNEEQLAALEEASLDEPVTVWMK 122


>VNG0043H [L] COG1943 Transposase and inactivated derivatives
          Length = 130

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 2   IFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQ 61
           I   I  ++   ++  +   DHVHIL +  P +D++KF+N+ K  +SR I+ EFP + Q 
Sbjct: 41  IAHDIADDFEADIKNVDGGTDHVHILFQTKPTTDLTKFINSLKGVTSRRIRSEFPEVTQT 100

Query: 62  LWKEYFWSRSYCLLTTG 78
           L ++ FW   Y L TTG
Sbjct: 101 L-EDAFWQPGYFLATTG 116


>HP1008 [L] COG1943 Transposase and inactivated derivatives
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 2   IFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKK-EFPIIRQ 60
           +F  +  ++   L E++ + DHVH+L+   P   +SK +N+ K  SSRL ++  F  +  
Sbjct: 43  VFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSVEA 102

Query: 61  QLWKEYFWSRSYCLLTTGGGPI 82
            LW ++ WS SY   + G  P+
Sbjct: 103 SLWGKHLWSPSYFAGSCGDAPL 124


>HP0414 [L] COG1943 Transposase and inactivated derivatives
          Length = 138

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 2   IFESIQMNYNITLQEWNHDKDHVHILMKAHPNSDISKFLNAYKSASSRLIKK-EFPIIRQ 60
           +F  +  ++   L E++ + DHVH+L+   P   +SK +N+ K  SSRL ++  F  +  
Sbjct: 43  VFAKVCKDFESELVEFDGESDHVHLLINYPPKVSVSKLVNSLKGVSSRLTRQHHFKSVEA 102

Query: 61  QLWKEYFWSRSYCLLTTGGGPI 82
            LW ++ WS SY   + G  P+
Sbjct: 103 SLWGKHLWSPSYFAGSCGDAPL 124


>DR1652 [L] COG1943 Transposase and inactivated derivatives
          Length = 140

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 22  DHVHILMKAHPNSDISKFLNAYKSASSRLIKKEFPIIRQQLWKEYFWSRSYCLLTT 77
           DHVH+L+ A P   I  F+ A K AS+R +   +P ++++LW    W+ SYC+LT 
Sbjct: 66  DHVHLLLSATPQQAIPDFVKALKGASARRMFVAYPQLKEKLWGGNLWNPSYCILTV 121


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,803,042
Number of extensions: 175057
Number of successful extensions: 589
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 20
Length of query: 82
Length of database: 38,378,431
Length adjustment: 52
Effective length of query: 30
Effective length of database: 32,381,063
Effective search space: 971431890
Effective search space used: 971431890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)