BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0459.0009.p
         (246 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5917 [Q] COG4689 Acetoacetate decarboxylase                        239   3e-63
mlr2399 [Q] COG4689 Acetoacetate decarboxylase                        237   1e-62
mlr3634 [Q] COG4689 Acetoacetate decarboxylase                        229   2e-60

>mll5917 [Q] COG4689 Acetoacetate decarboxylase
          Length = 247

 Score =  239 bits (610), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/235 (51%), Positives = 156/235 (66%), Gaps = 2/235 (0%)

Query: 11  SMPAASASYGRPPYRFIDREFFIITYESDPAAIRQAVPEPLQPDGSNTVSYEWIKMPDSS 70
           +MP  S +Y   PYRF +RE+ IITY +DP  +R  VPEPLQ      V +E+I+MPDS+
Sbjct: 12  AMPLISPAYPAGPYRFRNREYLIITYRTDPQKLRDLVPEPLQV-CEPMVKFEFIRMPDST 70

Query: 71  GLGSYEESGIVIPCTFQGEPCNFVAQMYLDNAPAILGGREIWGFPKKWANPRLSVEGTET 130
           G G Y E G VIP +F G   ++   M+LD+ P I GGRE+WGFPKK A+P L  E T+T
Sbjct: 71  GFGDYTEGGQVIPVSFYGRRGSYTHCMFLDDHPPIAGGRELWGFPKKLASPTLRTE-TDT 129

Query: 131 LTGTLHYNHVLVAMGTMPFKHNLLDQADTAAAIAKTQVNLKLIPDVDGSPKIAQLVAYSL 190
           L GTL Y  V VA GTM +KH   D A   A++A+    LK+IP VDG+P+I +LV Y L
Sbjct: 130 LVGTLDYGPVRVATGTMGYKHRAADLASVRASLAEPNFLLKIIPHVDGTPRICELVEYHL 189

Query: 191 ENVTVKGAWSGPARLNLIPHVNAPVADLPVKAYIGGKHFIADLTLPYARVIHDYL 245
           E+V ++GAW+GPA LNL  H  APVA+LPV   +   H +ADLTL   +V+HDYL
Sbjct: 190 EDVHLRGAWTGPAALNLWSHALAPVAELPVLEVVSAVHLVADLTLALGKVVHDYL 244


>mlr2399 [Q] COG4689 Acetoacetate decarboxylase
          Length = 261

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 157/235 (66%), Gaps = 2/235 (0%)

Query: 11  SMPAASASYGRPPYRFIDREFFIITYESDPAAIRQAVPEPLQPDGSNTVSYEWIKMPDSS 70
           +MP  S +Y   PYRF +RE+ IITY +DP  +R  VPEPL+      V +E+I+MPDS+
Sbjct: 12  AMPLTSPAYPVGPYRFRNREYLIITYRTDPKKLRSLVPEPLE-LSEPLVKFEFIRMPDST 70

Query: 71  GLGSYEESGIVIPCTFQGEPCNFVAQMYLDNAPAILGGREIWGFPKKWANPRLSVEGTET 130
           G G+Y ESG VIP TF+G   ++   M+L++ P I GGRE+WGFPKK A P L  E T+T
Sbjct: 71  GFGNYTESGQVIPVTFRGRKGSYTHCMFLNDHPPIAGGRELWGFPKKLATPTLRTE-TDT 129

Query: 131 LTGTLHYNHVLVAMGTMPFKHNLLDQADTAAAIAKTQVNLKLIPDVDGSPKIAQLVAYSL 190
           L GTL Y  V VA  TM +KH   D +   +++A+    LK+IP VDG+P+I +LV Y L
Sbjct: 130 LVGTLDYGPVRVATATMGYKHEAADLSAVRSSLAEPNFLLKIIPHVDGTPRICELVEYHL 189

Query: 191 ENVTVKGAWSGPARLNLIPHVNAPVADLPVKAYIGGKHFIADLTLPYARVIHDYL 245
           E+V ++GAW+GPA LNL  H  APVA+LPV   +   H +ADLTL   +V+HDYL
Sbjct: 190 EDVDLRGAWAGPASLNLWSHALAPVAELPVLEVVSAMHIVADLTLALGKVVHDYL 244


>mlr3634 [Q] COG4689 Acetoacetate decarboxylase
          Length = 256

 Score =  229 bits (585), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 150/236 (63%), Gaps = 2/236 (0%)

Query: 11  SMPAASASYGRPPYRFIDREFFIITYESDPAAIRQAVPEPLQPDGSNTVSYEWIKMPDSS 70
           +MP  + S+   PYRF DRE+ IITY +   A+   VP PL+ D    V YE+I+MPDS+
Sbjct: 6   AMPLTNPSFPPGPYRFFDREYIIITYRTTREALEAVVPAPLEID-EPLVKYEFIRMPDST 64

Query: 71  GLGSYEESGIVIPCTFQGEPCNFVAQMYLDNAPAILGGREIWGFPKKWANPRLSVEGTET 130
           G G Y E+G VIP  ++G+   +V  MYLD+   I GGRE+WGFPKK ANP++  EG E 
Sbjct: 65  GFGDYTETGQVIPVKYKGQHGGYVHSMYLDDDAPIAGGRELWGFPKKLANPKIVHEG-EV 123

Query: 131 LTGTLHYNHVLVAMGTMPFKHNLLDQADTAAAIAKTQVNLKLIPDVDGSPKIAQLVAYSL 190
           + GTLHY  VL A GTM +KH   D     A++A     +K+IP VDG P+I +LV Y L
Sbjct: 124 IVGTLHYGSVLCATGTMGYKHREADHDSVLASLAAPNFLIKIIPHVDGGPRICELVRYYL 183

Query: 191 ENVTVKGAWSGPARLNLIPHVNAPVADLPVKAYIGGKHFIADLTLPYARVIHDYLQ 246
            ++T+K AW+ PA L+L PHV A VA LPV   I   HF ADLTL    V+HDYL 
Sbjct: 184 TDITLKEAWTAPAALDLRPHVMADVAKLPVLDIISAVHFKADLTLGLGEVVHDYLS 239


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,660,249
Number of extensions: 833408
Number of successful extensions: 1209
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 142
Effective length of database: 26,383,695
Effective search space: 3746484690
Effective search space used: 3746484690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)