BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0459.0004.p (1044 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra... 237 9e-62 all1175_4 [T] COG2200 FOG: EAL domain 223 2e-57 RSp0254_4 [T] COG2200 FOG: EAL domain 221 3e-57 mll5564_2 [T] COG2200 FOG: EAL domain 219 1e-56 sll0821_4 [T] COG2200 FOG: EAL domain 219 2e-56 >AGl1027GM [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component Length = 274 Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 0/460 (0%), Positives = 0/460 (0%), Gaps = 25/460 (5%) Query: 597 GQYDMLLENQKNMHR-----------------LAYMDSLSSLPNRILLLDTME---SYFH 636 D L Q + L Sbjct: 188 TARDTRLFAQALNLTPCFTPVASPQSNGMSEAFVKTLKRDYIRISALPDAQTALRLIDGW 247 Query: 637 RPGGKAALLFVDTDNFKYINDTLGHKSGDILIRQASERLQSVMREGDMLSRLGGDEFVVF 696 Sbjct: 248 - 306 Query: 697 IKDVEDRAEVLNLAESILRSFRRSFLIGESNLYISVSIGISFYPEDGETTEEILMNADVA 756 Sbjct: 307 366 Query: 757 MYRAKEEGKNTFVVYDKSMHMSFNERMNIEKHLRSAMNNNEFELHYQPQVEIKTGLITGF 816 Sbjct: 367 426 Query: 817 EALIRWNSPVLGFVSPLSFIKIAEDSRLIIYIGEWVLREASAFMKSMNDRTGLPYKISVN 876 Sbjct: 427 ---- 482 Query: 877 ISIIQLLQDDFVDIVLDSLEESGLAPNCLELEITESIFMESFENTVSKLEFLKSRGIRIA 936 Sbjct: 483 542 Query: 937 LDDFGTGYSSLSYLQQLPISTLKMDKIFIDSLADQGYSQSFVQTIIILGHKMGLDVVAEG 996 Sbjct: 543 602 Query: 997 VEDADQLAFLKEADCDKVQGYLISRPVPQRGVIELLEPQR 1036 Sbjct: 603 642 >all1175_4 [T] COG2200 FOG: EAL domain Length = 261 Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/259 (44%), Positives = 163/259 (62%) Query: 781 ERMNIEKHLRSAMNNNEFELHYQPQVEIKTGLITGFEALIRWNSPVLGFVSPLSFIKIAE 840 E + +EK LR A+ E +++YQP+V I TG ITG EAL+RW P +G V+P FI IAE Sbjct: 1 ELLTLEKSLRYALEKQELKVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFIPIAE 60 Query: 841 DSRLIIYIGEWVLREASAFMKSMNDRTGLPYKISVNISIIQLLQDDFVDIVLDSLEESGL 900 ++ LII IGEWVLR A ++ + P +++VN+S Q Q +++V L E+GL Sbjct: 61 ETGLIIPIGEWVLRTACMQNRAWQEAGLPPVQMAVNLSPKQFRQPTLLELVSAILAETGL 120 Query: 901 APNCLELEITESIFMESFENTVSKLEFLKSRGIRIALDDFGTGYSSLSYLQQLPISTLKM 960 AP LELEITES +E + T S LE L+ G+ IA+DDFGTG+SSLS LQ LP+ LK+ Sbjct: 121 APEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPLHNLKI 180 Query: 961 DKIFIDSLADQGYSQSFVQTIIILGHKMGLDVVAEGVEDADQLAFLKEADCDKVQGYLIS 1020 D FI +L V+ I+ LG +GL + AEGVE ++L FLK +C VQG+L Sbjct: 181 DGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQGFLFH 240 Query: 1021 RPVPQRGVIELLEPQRRHG 1039 +P+ E+L+ +++H Sbjct: 241 KPLSAEKATEILQGEKKHA 259 >RSp0254_4 [T] COG2200 FOG: EAL domain Length = 261 Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/257 (42%), Positives = 157/257 (61%), Gaps = 1/257 (0%) Query: 782 RMNIEKHLRSAMNNNEFELHYQPQVEIKTGLITGFEALIRWNSPVLGFVSPLSFIKIAED 841 R+N+E +R+A+ +F L YQPQ++ KTG I G EALIRW P G + P +FI +AE+ Sbjct: 2 RLNLEHQIRAALEQGQFRLLYQPQIDTKTGRICGLEALIRWIHPTRGLLPPAAFIPVAEE 61 Query: 842 SRLIIYIGEWVLREASAFMKSMNDR-TGLPYKISVNISIIQLLQDDFVDIVLDSLEESGL 900 S L++ IG WVL EA+ + + R G I+VN+S +Q + + +L + GL Sbjct: 62 SGLVVEIGNWVLAEAAQQRAAWHARGLGEDLTIAVNVSPLQFKRGTVLPTLLRLQRQHGL 121 Query: 901 APNCLELEITESIFMESFENTVSKLEFLKSRGIRIALDDFGTGYSSLSYLQQLPISTLKM 960 LELE+TES+ ME E T+ L ++ G+RIA+DDFGTGYSSL+YL++LPI +K+ Sbjct: 122 GSGFLELEVTESMLMEGTERTIEDLTAIRQLGVRIAIDDFGTGYSSLAYLKRLPIDLIKI 181 Query: 961 DKIFIDSLADQGYSQSFVQTIIILGHKMGLDVVAEGVEDADQLAFLKEADCDKVQGYLIS 1020 D+ F+ + + T+++L H +G+ V AEGVEDA Q AFL CD +QGY S Sbjct: 182 DRAFVKDIDRDSNDAAICTTVVVLAHNLGVKVCAEGVEDAAQSAFLASHQCDVLQGYYFS 241 Query: 1021 RPVPQRGVIELLEPQRR 1037 P+ V LLE R Sbjct: 242 EPLLPEAVTALLERDAR 258 >mll5564_2 [T] COG2200 FOG: EAL domain Length = 272 Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/255 (41%), Positives = 156/255 (61%), Gaps = 4/255 (1%) Query: 770 VYDKSMHMSFNERMNIEKHLRSAMNNNEFELHYQPQVEIKTGLITGFEALIRWNSPVLGF 829 V+D M + R +E L +A +F+LHYQPQ+++ TG I G+EALIRWN P G Sbjct: 1 VFDSEMGRVADHRQWVESELHTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPERGM 60 Query: 830 VSPLSFIKIAEDSRLIIYIGEWVLREASAFMKSMNDRTGLPYKISVNISIIQLLQDDFVD 889 + P+ FI+IAE++ +I IGEWVLR+A + + D ++VNIS +Q + DFV Sbjct: 61 IPPMEFIQIAEETGMINPIGEWVLRKACSDAHHLPDDC----FVAVNISPVQFMTKDFVG 116 Query: 890 IVLDSLEESGLAPNCLELEITESIFMESFENTVSKLEFLKSRGIRIALDDFGTGYSSLSY 949 IV D++ +G+ P+ LELE+TE+ M+ + + L+ L GI +A+DDFGTGYS+LSY Sbjct: 117 IVRDTMRATGIKPSRLELEVTETAMMQDRDRAAAILKELAEMGISVAVDDFGTGYSNLSY 176 Query: 950 LQQLPISTLKMDKIFIDSLADQGYSQSFVQTIIILGHKMGLDVVAEGVEDADQLAFLKEA 1009 L LK+D+ F+ + S + V TI+ L +G+ ++AEGVE Q L+ A Sbjct: 177 LIDFSFGKLKIDRSFVSRIGTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAA 236 Query: 1010 DCDKVQGYLISRPVP 1024 C+ VQGYL RP P Sbjct: 237 GCEVVQGYLFGRPAP 251 >sll0821_4 [T] COG2200 FOG: EAL domain Length = 255 Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/252 (43%), Positives = 163/252 (64%) Query: 781 ERMNIEKHLRSAMNNNEFELHYQPQVEIKTGLITGFEALIRWNSPVLGFVSPLSFIKIAE 840 +R+ +E LR A+ N EF L++QPQV + TG + G EAL+RW P LG V+P FI +AE Sbjct: 1 DRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQVAPDVFIPLAE 60 Query: 841 DSRLIIYIGEWVLREASAFMKSMNDRTGLPYKISVNISIIQLLQDDFVDIVLDSLEESGL 900 + LI ++G+WVL A A + TG +++VNIS Q + +++ VL+ L+ +G+ Sbjct: 61 ELGLINHLGQWVLETACATHQHFFRETGRRLRMAVNISARQFQDEKWLNSVLECLKRTGM 120 Query: 901 APNCLELEITESIFMESFENTVSKLEFLKSRGIRIALDDFGTGYSSLSYLQQLPISTLKM 960 P LELEITES+ ME + TV L L+ G+++A+DDFGTGYSSLS L+QLPI LK+ Sbjct: 121 PPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSILKQLPIHRLKI 180 Query: 961 DKIFIDSLADQGYSQSFVQTIIILGHKMGLDVVAEGVEDADQLAFLKEADCDKVQGYLIS 1020 DK F++ L ++G + +Q +I L + + L+ VAEG+E QL L++ C QGY ++ Sbjct: 181 DKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKMGCHLGQGYFLT 240 Query: 1021 RPVPQRGVIELL 1032 RP+P ++ L Sbjct: 241 RPLPAEAMMTYL 252 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 73,025,285 Number of extensions: 3021557 Number of successful extensions: 11155 Number of sequences better than 1.0e-05: 352 Number of HSP's gapped: 10875 Number of HSP's successfully gapped: 357 Length of query: 1044 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 927 Effective length of database: 24,884,353 Effective search space: 23067795231 Effective search space used: 23067795231 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)