BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0459.0001.p
         (538 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3595 [R] COG2509 Uncharacterized FAD-dependent dehydrogenases      405   e-113
STM0600 [T] COG1966 Carbon starvation protein, predicted membran...   168   2e-41

>CAC3595 [R] COG2509 Uncharacterized FAD-dependent dehydrogenases
          Length = 457

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/468 (44%), Positives = 305/468 (65%), Gaps = 21/468 (4%)

Query: 68  YDVIVVGAGPAGIFACYELTRKAPELKVLLVDKGHDIYRRNCPILEEKIKLCPPASGRKE 127
           YDVI+VGAG +GIF  YEL +K P++ +L+++KGH + +R CPI  +KIK C   S    
Sbjct: 3   YDVIIVGAGASGIFTAYELVKKNPKVNILMIEKGHSLEKRKCPIDGKKIKACINCS---- 58

Query: 128 FAGCLPACSITAGFGGAGAYSDGKFNITTEFGGWMTDYLAPSKVLELIQYVDAINLEHGA 187
                  C+I  G+GGAG+ SDGK+NIT  FGG +  Y+   + ++L+ YVD++    G 
Sbjct: 59  ------VCNIMNGYGGAGSLSDGKYNITNNFGGDLHKYVGAEEAIDLMNYVDSVLCSMGG 112

Query: 188 TPVITDPTTESIRGIEQRGYAAGLKLLRAQVRHLGTEQNLEILKSIYEYLRVRIDMLFKT 247
                  T  S   ++ +     L LL A+VRHLGT++NL I+ +I+++L+ ++D++F T
Sbjct: 113 EDAKLYSTENS--KLKAKALQYDLHLLDAKVRHLGTDRNLIIMANIFDFLKDKMDIIFDT 170

Query: 248 EVQDIVTVKEEGKHRVTGITLKNGESYAADKVMIAPGRDGSAWLTDVLKKRRLKMYNNQV 307
           EV +I    E     +  I   N +++++ ++++A GR GS W++D+  K  +K  +N+V
Sbjct: 171 EVLNIYKGDE-----LFNIETSN-KTFSSKELILATGRSGSKWISDMCAKVGIKTKSNRV 224

Query: 308 DVGVRVETSDVVMREINEHLYEGKFIFNTS-VGTRVRTFCSNPSGHVVVENHSGVMAANG 366
           D+GVRVE    V   I + +YE K ++ T      VRTFC NP G VV EN +G++  NG
Sbjct: 225 DIGVRVELPAEVFSHITDAVYESKIVYKTKKYNDMVRTFCMNPYGEVVNENTNGIITVNG 284

Query: 367 HSYKDPALGSMNTNFALLVSHTFTEPFDKPNEYAREICKRANDLSSGGVIVQKYGDILRG 426
           HSY +P L + NTNFALLV++ FTEPF+  NEY   I + +N L  GGV+VQ++GD++ G
Sbjct: 285 HSYANPELRTENTNFALLVTNNFTEPFEDSNEYGASIARLSNMLG-GGVLVQRFGDLVNG 343

Query: 427 RRSTETRIKEGFLEPTLKEAVPGDLGLVLPYNTMKSLIEMVEALEKVTPGIASEHTLFYG 486
           RR+ E R+++ F  PTLK A PGDLGLV+P   +  +IEM+ AL  + PG A+E TL YG
Sbjct: 344 RRTNEHRMEKSFTTPTLK-ATPGDLGLVIPKRQLDDIIEMIYALNNIAPGTANEDTLLYG 402

Query: 487 VEAKFYSARPKLTENLETEISGLYCGGDGAGITRGLAQAGAAGVWIAR 534
           VE KFY+++ ++ +NLET+I GLY  GDG+G+T  L+QA A+GV+IAR
Sbjct: 403 VEVKFYNSKVEVDKNLETKIKGLYILGDGSGVTHSLSQAAASGVYIAR 450


>STM0600 [T] COG1966 Carbon starvation protein, predicted membrane protein
          Length = 553

 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 23/344 (6%), Positives = 59/344 (17%), Gaps = 30/344 (8%)

Query: 202 IEQRGYAAGLKLLRAQVRHLGTEQNLEILKSIYEYLRV--RIDMLFKTEVQDIVTVKEEG 259
                                 +              +   +   F           E+ 
Sbjct: 120 SRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAMGEAFAQYALSS----EKL 175

Query: 260 K-HRVTGITLKNGESYAADKVMIAPGRDGSAWLTDVLKKR--RLKMYNNQVDVGVRVETS 316
               VT     N + Y   +  +A        L  ++     R  +      +   +   
Sbjct: 176 YRDIVT----DNADDYRFAQWQLAVIALVVV-LILLVAWYGIRRMLLTPLAKIIAHIREI 230

Query: 317 DVVMREINEHLYEGKFIFNTSVGTRVRTFCSNPSGHVVVENHSGVMAANGHSYKDPALGS 376
                       +G+        +      S       V   S  + A        A  +
Sbjct: 231 AGGNLANTL-TIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTRE--IAAGNT 287

Query: 377 MNTNFALLVSHTFTEPFDKPNEYAREICKRANDLSSGG--VIVQKYGDILRGRRSTETRI 434
             ++     +    E      +    + + A++                  G+       
Sbjct: 288 DLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVD---- 343

Query: 435 KEGFLEPTL--KEAVPGDLGLVLPYNTMKSLIEMVEALEKVTPGIASEHTLFYGVEAKFY 492
                   +        D+  V+     ++ I  + A  +                    
Sbjct: 344 GVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRN 403

Query: 493 SARPKLTENLETEISGLYCGGDGAGITRGLAQAGAAGVWIARGM 536
            A              +    + +                    
Sbjct: 404 LAS-----RSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNN 442


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 40,538,111
Number of extensions: 1739577
Number of successful extensions: 5889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5882
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 38,378,431
Length adjustment: 111
Effective length of query: 427
Effective length of database: 25,576,357
Effective search space: 10921104439
Effective search space used: 10921104439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)