BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0008.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 270 1e-72 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 261 9e-70 YPO1721 [G] COG0395 ABC-type sugar transport system, permease co... 243 3e-64 lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 169 6e-42 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 161 8e-40 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 127/258 (49%), Positives = 181/258 (70%), Gaps = 1/258 (0%) Query: 21 MVYPIIWLLLGSFKANDEIFT-ATSLWPSQFYWSNYSDGWGAVPGFTFGKFILNSLLISM 79 MVYPI+W++ S K EIF+ A+SL PS+F WSNY DGW F + NS +I+ Sbjct: 24 MVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITT 83 Query: 80 LCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVMFSNFGWINTI 139 V G +LSSS+VA+ FAR+ F KK+ FA L+ T+MLP Q+ LIP+Y++F N GW+NT Sbjct: 84 SVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTF 143 Query: 140 LPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILLPNCKPVLYTM 199 PLI+P F+ FF++L+IQF+RGIPRELDEAA++DGC F F+ ++LP KP L T+ Sbjct: 144 YPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTV 203 Query: 200 GIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMSIIAIIPPVLI 259 IFAF+W+WDD+ L+YLN+ TV L L+ F+D + +WG+L AMS ++++P +I Sbjct: 204 AIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFII 263 Query: 260 FFVAQKHFVEGVATSGIK 277 F Q++ VEG++T+G+K Sbjct: 264 FLFFQRYLVEGISTTGLK 281 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 261 bits (667), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 124/268 (46%), Positives = 187/268 (69%), Gaps = 2/268 (0%) Query: 11 NILLVLMALTMVYPIIWLLLGSFKANDEIFTAT-SLWPSQFYWSNYSDGWGAVPGFTFGK 69 ++ +A+ ++YP+IWL + SFK + IFT + SL P F SNY++GW + G F Sbjct: 30 HVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLT 89 Query: 70 FILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVM 129 FI NS +I L G ++SS+++A+ FAR+ F KK WFA ++GTLMLP +VL+IP+Y+M Sbjct: 90 FIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIM 149 Query: 130 FSNFGWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILL 189 F+ W+N+ P+++P F +AFF++LMIQF+R IP ELDEAA +DGCG F F+ I+L Sbjct: 150 FAKLDWLNSFKPIVVPQFFG-HAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRIIL 208 Query: 190 PNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMS 249 P P L T IF+F W W++ LLYLN+ Y V LAL++F+D + NWG++FAMS Sbjct: 209 PLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMFAMS 268 Query: 250 IIAIIPPVLIFFVAQKHFVEGVATSGIK 277 ++++P +L+FF+ QK+ V+G++T+G+K Sbjct: 269 AVSLLPVILVFFLFQKYIVQGISTTGLK 296 >YPO1721 [G] COG0395 ABC-type sugar transport system, permease component Length = 306 Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 111/274 (40%), Positives = 182/274 (66%) Query: 4 KTSAIAKNILLVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVP 63 K SA + I+L+++ L M+YP++W+ +FK N+EIFT LWP + +GW Sbjct: 32 KVSAAFRYIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDGFINGWKTGT 91 Query: 64 GFTFGKFILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLL 123 + FG ++LN+ + V ++SS++VA+ FAR P KK WF L+ T++LP+ VLL Sbjct: 92 EYNFGHYMLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVLL 151 Query: 124 IPRYVMFSNFGWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRT 183 IP+Y+MF G +N+ LPL +P A+ FFV+++IQF+RG+PR+++EAA +DGC F+ Sbjct: 152 IPQYIMFREMGMLNSYLPLYLPLAFATQGFFVFMLIQFLRGVPRDMEEAAQIDGCNSFQV 211 Query: 184 FYNILLPNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWG 243 + +++P KP + ++ +F F+WS +D+ L+Y+ V KY + LAL+M +D W Sbjct: 212 LWYVVVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPWN 271 Query: 244 SLFAMSIIAIIPPVLIFFVAQKHFVEGVATSGIK 277 + AM+ I+I+P +++FF+AQ++FV+GV +SGIK Sbjct: 272 EILAMASISILPSIIVFFLAQRYFVQGVTSSGIK 305 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 158/281 (56%), Gaps = 21/281 (7%) Query: 12 ILLVLMALTMVYPIIWLLLGSFKANDEIFTAT-SLWPSQFYWSNYSDGWGAVPGFTFGKF 70 I ++L++L V+P+IW + SFK EI + + +L P F W NY D + P F ++ Sbjct: 17 IAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTP---FARY 73 Query: 71 ILNSLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVMF 130 ++NSL++++ V L SL + FA++ F KK F LG++M+P V +IP +++ Sbjct: 74 LVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVL 133 Query: 131 SNF--------------GWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMD 176 NF G+INT ++IP A+ AF ++ M QF +P EL EAA +D Sbjct: 134 KNFPLMGGNDITGHGGMGFINTYWAILIPG--AAGAFSIFFMKQFFETLPDELSEAARID 191 Query: 177 GCGPFRTFYNILLPNCKPVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDN 236 GC F+ F+ I +P K L T+GI F W+ + L+ LN + TV + L F N Sbjct: 192 GCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQYN 251 Query: 237 AAQINWGSLFAMSIIAIIPPVLIFFVAQKHFVEGVATSGIK 277 + N+G+L A +I++ IP + +F AQK+FVEG+A +G K Sbjct: 252 ESA-NYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK 291 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 154/263 (58%), Gaps = 6/263 (2%) Query: 14 LVLMALTMVYPIIWLLLGSFKANDEIFTATSLWPSQFYWSNYSDGWGAVPGFTFGKFILN 73 L+ +A ++PIIW L GS KA+ E+ T +L+PS WSNY + + +P F + N Sbjct: 22 LIGIAWCALFPIIWALSGSLKADGEV-TEPTLFPSHPQWSNYREVFALMP---FWRMFFN 77 Query: 74 SLLISMLCVAGCLLSSSLVAFPFARMNFPLKKIWFAILLGTLMLPTQVLLIPRYVMFSNF 133 ++L + AG + SL + FAR+ F + F + L TLM+P V +IP++++ Sbjct: 78 TVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIV 137 Query: 134 GWINTILPLIIPYFVASNAFFVYLMIQFMRGIPRELDEAALMDGCGPFRTFYNILLPNCK 193 GW++T +I+P S AF YLM QF R +P +L+EAA++DGC P++ ++ ILLP+ + Sbjct: 138 GWVDTPWAMIVPGLFGS-AFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSR 196 Query: 194 PVLYTMGIFAFLWSWDDYFDQLLYLNEVRKYTVPLALQMFVDNAAQINWGSLFAMSIIAI 253 P + +G+ ++ W+D+ LL + T+ L L + + W L A S++ + Sbjct: 197 PAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGL-VRLRGEYVARWPVLMAASMLML 255 Query: 254 IPPVLIFFVAQKHFVEGVATSGI 276 +P V+++ VAQ+ FV G+A +G+ Sbjct: 256 VPLVILYAVAQRSFVRGIAVTGL 278 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.144 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,309,971 Number of extensions: 752976 Number of successful extensions: 2472 Number of sequences better than 1.0e-05: 167 Number of HSP's gapped: 2240 Number of HSP's successfully gapped: 168 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)