BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0007.p (313 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 286 3e-77 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 267 2e-71 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 251 8e-67 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 165 8e-41 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 159 8e-39 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 286 bits (732), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 145/297 (48%), Positives = 196/297 (65%), Gaps = 2/297 (0%) Query: 13 KPTKKAGKSKNVLIAYLFLLPWLIGLFVLTLWPFINSFYXXXXXX-XXXXXXFVGLQNYI 71 K ++ K K + Y + PWL+G F L + P I S Y +VGLQNYI Sbjct: 18 KTRQERKKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLSSANWVGLQNYI 77 Query: 72 DML-SDARFWKSMEVTLKYVVLSVPLKLAMALFVAILLYKASLGMTIYRTLFYLPSLIGG 130 + SD RF +S++VTL +V + PLKLA ALF+A+L G ++ T++Y+PS+IGG Sbjct: 78 HIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRKGSGLFSTIYYIPSIIGG 137 Query: 131 SVAVAVMWRNIFGMEGLLNSFLSLMGITGKEWLGQPDYALYVLILLVVWQFGSSMVIFLA 190 SVAVAV+W+ +FG G +NSFL L G +G W+G DYAL +LILLVVWQFGS M+IFLA Sbjct: 138 SVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSILILLVVWQFGSPMIIFLA 197 Query: 191 GLKNVPGDLYEAAQIDGAGSVARFFKITLPMISPILLFNLILQTISSFQVFTQGYIITKG 250 GL+ +P +LYEAA +DGA S +FF ITLPM++P++ FNLI+QTI F FTQ Y+IT G Sbjct: 198 GLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQAYLITGG 257 Query: 251 GPMDETLFSVLYIYDLAFKQQRMGYASAVSWXXXXXXXXXXXXXXXXSKRWVYYEND 307 GP+D TLF +Y+Y++AF+ RMGYASA++W S WV+YE++ Sbjct: 258 GPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITFVFFKSSSYWVHYESE 314 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/299 (47%), Positives = 192/299 (64%), Gaps = 5/299 (1%) Query: 16 KKAGKSKNVLIAYLFLLPWLIGLFVLTLWPFINS-FYXXXXXXXXXXXXFVGLQNYIDML 74 K K+ L Y F+ P++IG T+ P S F ++GL N+ +M Sbjct: 11 KSRSIRKDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPKWIGLDNFKEMF 70 Query: 75 S-DARFWKSMEVTLKYVVLSVPLKLAMALFVAILLYKASLGMTIYRTLFYLPSLIGGSVA 133 + D ++W+S++VT YV+ VPL+L ALF+A++L A+ G IYRTLFYLPS+IGGSVA Sbjct: 71 TGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSVA 130 Query: 134 VAVMWRNIFGMEGLLNSFLSLMGITGK-EWLGQPDYALYVLILLVVWQFGSSMVIFLAGL 192 VA+MWRNIFG +G++N+ L +GI K W P AL+ LILL VWQFGSSM+IFLAGL Sbjct: 131 VAIMWRNIFGNDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLAGL 190 Query: 193 KNVPGDLYEAAQIDGAGSVARFFKITLPMISPILLFNLILQTISSFQVFTQGYIITK--G 250 KN+P EAA +DGA V RFFKITLP+++PI+ FNL++QTIS+F FT YII+K G Sbjct: 191 KNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKGEG 250 Query: 251 GPMDETLFSVLYIYDLAFKQQRMGYASAVSWXXXXXXXXXXXXXXXXSKRWVYYENDTK 309 GP+D TL LY++ AF +MGYASA++W S WV+YE+ + Sbjct: 251 GPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYESKEE 309 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 131/295 (44%), Positives = 182/295 (61%), Gaps = 2/295 (0%) Query: 21 SKNVLIAYLFLLPWLIGLFVLTLWPFINSFYXXXXXXXXXXX-XFVGLQNYIDMLS-DAR 78 ++N ++ ++ P++IGL + T +PF++SF+ + G++NY ML+ D Sbjct: 2 NENRMLGLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDL 61 Query: 79 FWKSMEVTLKYVVLSVPLKLAMALFVAILLYKASLGMTIYRTLFYLPSLIGGSVAVAVMW 138 FWKSM VT YV L++PLKLA AL +A +L G+ +RT FY+PS++G SVA+AV+W Sbjct: 62 FWKSMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLW 121 Query: 139 RNIFGMEGLLNSFLSLMGITGKEWLGQPDYALYVLILLVVWQFGSSMVIFLAGLKNVPGD 198 R +F ++GLLNSF+ + G WLG+P AL + LL VWQFGS+MVIFLA L+NVP Sbjct: 122 RALFAIDGLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQS 181 Query: 199 LYEAAQIDGAGSVARFFKITLPMISPILLFNLILQTISSFQVFTQGYIITKGGPMDETLF 258 YEAA IDGA F K+T+P+I+P++ FN I+QT +FQ FT Y+IT GGP T Sbjct: 182 QYEAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYL 241 Query: 259 SVLYIYDLAFKQQRMGYASAVSWXXXXXXXXXXXXXXXXSKRWVYYENDTKARGK 313 LYIYD AFK MGY +A++W SK WV+Y D + Sbjct: 242 FSLYIYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADKGGKND 296 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 153/288 (53%), Gaps = 4/288 (1%) Query: 20 KSKNVLIAYLFLLPWLIGLFVLTLWPFINSF-YXXXXXXXXXXXXFVGLQNYIDMLSDAR 78 + K + +FLLP L+G + P + S F G +NY + +D Sbjct: 6 RKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPE 65 Query: 79 FWKSMEVTLKYVVLSVPLKLAMALFVAILLYKASLGMTIYRTLFYLPSLIGGSVAVAVMW 138 FWKS T+ +++ +P + + L A++L + +R +++LP +I VAV+++W Sbjct: 66 FWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLP-VITSWVAVSLVW 124 Query: 139 RNIFGME-GLLNSFLSLMGITGKEWLGQPDYALYVLILLVVWQ-FGSSMVIFLAGLKNVP 196 + +F GL+N FLSL+GI G WL P A+ +I+ W+ G MV+FL GL+N+ Sbjct: 125 KWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNIS 184 Query: 197 GDLYEAAQIDGAGSVARFFKITLPMISPILLFNLILQTISSFQVFTQGYIITKGGPMDET 256 YEAA +DGA + + F IT+P+++P F I+ I+SFQVF Q I+T+GGP T Sbjct: 185 PSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGAT 244 Query: 257 LFSVLYIYDLAFKQQRMGYASAVSWXXXXXXXXXXXXXXXXSKRWVYY 304 + V IY+ AF+ MGYASA+SW KRW Y Sbjct: 245 MTLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 163/309 (52%), Gaps = 7/309 (2%) Query: 1 METVQTRPAVTVKPTKKAGK-SKNVLIAYLFLLPWLIGLFVLTLWPFINSFYXXXXXXXX 59 ME R T K K+ + +K YLF+ P +IG + L P + S Y Sbjct: 3 MEVETPRETKTTKARKQKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDL 62 Query: 60 XXX-XFVGLQNYIDM-LSDARFWKSMEVTLKYVVLSVPLKLAMALFVAILLYKASLGMTI 117 + G NY + ++D F K++ T Y L +P+ +A++L +A+ L + G+ + Sbjct: 63 YNEPVWTGADNYYRLFVTDDLFRKTVFNTF-YAALGIPIGMAVSLGIAVALNQKVKGIAL 121 Query: 118 YRTLFYLPSLIGGSVAVAVMWRNIFGME-GLLNSFLSLMGITGKEWLGQPDYALYVLILL 176 +RT F+LP+ + VA+ ++WR IF + GLLN L+ +GI G WL +A+ +I+ Sbjct: 122 FRTAFFLPA-VSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQ 180 Query: 177 VVWQ-FGSSMVIFLAGLKNVPGDLYEAAQIDGAGSVARFFKITLPMISPILLFNLILQTI 235 VW G +M+++LA L+ V LYEAA IDG + +F IT+P ISP F LI TI Sbjct: 181 GVWGGLGINMILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTI 240 Query: 236 SSFQVFTQGYIITKGGPMDETLFSVLYIYDLAFKQQRMGYASAVSWXXXXXXXXXXXXXX 295 + Q F + I+T+GGP T V Y++ AF+ MGYASA++W Sbjct: 241 GALQDFQRFMIMTEGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINF 300 Query: 296 XXSKRWVYY 304 +K+WV+Y Sbjct: 301 KLAKKWVHY 309 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,042,358 Number of extensions: 716881 Number of successful extensions: 2603 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 2376 Number of HSP's successfully gapped: 171 Length of query: 313 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 207 Effective length of database: 26,153,027 Effective search space: 5413676589 Effective search space used: 5413676589 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)