BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0454.0005.p (525 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1123 [T] COG4753 Response regulator containing CheY-like recei... 201 2e-51 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 164 3e-40 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 100 1e-20 BH0793 [T] COG4753 Response regulator containing CheY-like recei... 94 6e-19 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 92 3e-18 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 152/544 (27%), Positives = 260/544 (47%), Gaps = 55/544 (10%) Query: 5 ALLVDDEDFVLDGLKEAIDWKKYGINIAGAVNNGREALEFLEHSGITIDIVFTDIKMPVM 64 +++DDE+ V+ GLK+ I WK G G NGR L+ + + + IV TDI MP+M Sbjct: 4 VVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIVRET--SPHIVLTDIYMPIM 61 Query: 65 DGFGLTEALKSAEYPCKIIVLTGHEEFEFAKKAIRYGIFDYLLKPVELESIELTIDRLVK 124 G + + L+ + ++++L+G+ EFE A+KA++ I DYL KP +++IE + R++ Sbjct: 62 YGLDMIQILREDGFDGEVVILSGYSEFEHARKAMQLNITDYLSKPASVDTIETVLKRVIN 121 Query: 125 VIRTEKEQSQETAEVEHRLNEGLPLIHERLLFSLL-----NGTYEPELMCYIGVPMDAPY 179 + ++ Q E+ +++ PL+ + SLL NG E + I D + Sbjct: 122 KLEEKQRQQGYLQELTNKVKRYEPLVETEWMKSLLTGRLRNGEIPEEFLAKITKWKDQQH 181 Query: 180 YQAVIGYTGSSNN-----TWNIEMESVRQSVSAALRSV--GNPVSLAYNE----RGFILL 228 + Y G N W + R SV +R V G P+ Y E R + L Sbjct: 182 IACSLTYDGPQNKELKPADWYL----FRYSVHKMIREVLNGYPIDFRYLEMDAYRSALCL 237 Query: 229 MSYRSTEEAAEAPLILE---RVSQELQRKRQIGLNFAQGKPCSEPYQIPQSFQEAREMLK 285 +S E + +++E +V Q + + G+ + + +SF EA Sbjct: 238 HVNKSVSEPVLSCMLMEIKDQVEQGIYSSFNVKTTVHYGRVKEDWTDLSESFHEA----- 292 Query: 286 HKLFSGNTEGQEGSHGLEDSFESG-RTMFPRKEKQRLLNAVYACNR-------EQVIGQL 337 E Q S L + +E G R FP + Q+L +A+ + E+ +G L Sbjct: 293 ------CMESQ--SFPLGNPYEDGTRATFPMESSQKLYDAIRYADATRAKEVLEEAVGVL 344 Query: 338 EDLQRQYSTAQHLYPAGYIRKLSAELIMLLSLILYERNESINQLIPGEPEFVTSIQSQND 397 ++ YST GY K+ E+ +++ LY+ I ++ + + + Q + Sbjct: 345 GEVP--YSTL-----VGY--KVGIEIWTIITYSLYDIGILIQEMFDEDFDLAQHLTKQGN 395 Query: 398 PKLVFDAVKRLYSLLLDLPVQSEMKKNRQTIRTVLDYINNHLDEEIRLEELAQKVFLTPN 457 + + + E K++Q I V+ YI HL E I L+++A +++++ N Sbjct: 396 WQEWIRFLCEQIEHICYHQQWDENIKHKQLIEQVMIYIEKHLAENITLQDIADELYISRN 455 Query: 458 YLGSLFKESVGIGFSDYLMKQRMELAKRLLLQPGSRIYEVSQKVGYKNPHYFSKLFKEYA 517 YLG +FK+ VG F +Y+ + RME AK+++ + IYEVS+KVGY NP YF+ +FK+Y Sbjct: 456 YLGQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYT 515 Query: 518 GIKP 521 G P Sbjct: 516 GYTP 519 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 133/547 (24%), Positives = 266/547 (48%), Gaps = 56/547 (10%) Query: 5 ALLVDDEDFVLDGLKEAIDWKKYGINIAGAVNNGREALEFLEHSGITIDIVFTDIKMPVM 64 LL DDE FV GLK I+W+K G +A +NG +A + ++ I D+V TDI+MPV Sbjct: 4 VLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQE--IKPDLVITDIRMPVF 61 Query: 65 DGFGLTEAL-KSAEYPCKIIVLTGHEEFEFAKKAIRYGIFDYLLKPVELESIELTIDRLV 123 DG L + + ++ + K I+++G+ +F +A+KA+R+G D++LKP++ + +E + +L Sbjct: 62 DGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLA 121 Query: 124 KVIRTEKEQSQETAEVEHRLNEGLPLIHERLLFSLLNGTYEPELMCY---IGVPMDAPYY 180 + EK + + +V L+ + + SL E E+ + + + YY Sbjct: 122 ATLDQEKATNSDQEKV---------LLDQIFIHSLGENKKENEVRRWAAKLNINNRHFYY 172 Query: 181 QAVIGYTGSS------NNTWN------IEMESVRQSVSAALRSVGNPVSLAYNERGFILL 228 ++ S N + I RQ+ + ++ + AY G ++ Sbjct: 173 YLLLEVNNLSLDKGFINEQYKEPIRKVIRETVARQAATEEYTAIYEQLDHAY---GLLIT 229 Query: 229 MSYRSTEEAAEAPLILERVSQELQRKRQIGLNFAQGKPCSEPYQIPQSFQEAREMLKHK- 287 + PL E++ +++Q I L G + I +S++ A + +K Sbjct: 230 SEHLKKFNGQIEPLA-EKLRKDIQDFTNIPLTVYVGAKTDDLSTIKKSYETANSLRNYKY 288 Query: 288 LFS-GNTEGQEGSHGLEDSF-ESGRTMFPRKEKQRLLNAVYACNREQVIGQLEDLQRQYS 345 +F+ N E + ++ ++ E +F L+ + N ++++ ++ + ++ Sbjct: 289 IFNEKNVFIHEQTESVDTTYDELNNHLFVT-----LMEQMEENNSDRIVNIIDKIFSEFQ 343 Query: 346 TAQHLYPAGYIRKLSAELIMLLSLILYERNESINQLIPGEPEFVTSIQSQNDPK---LVF 402 T + + P+ ++ + ++ + Q + G+ + S Q+ + + L F Sbjct: 344 TKKFV-PSAVKTSVNRCVHKVMQTV---------QAMEGDTGKIISAQAMTNWESYNLTF 393 Query: 403 DAVKRLYSLLL---DLPVQSEMKKNRQT-IRTVLDYINNHLDEEIRLEELAQKVFLTPNY 458 D +K++++ + + +Q K+N ++ I V YI NH E I L+ +A ++ P Y Sbjct: 394 DQLKQVFTKFVLEAAVIIQELRKENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVY 453 Query: 459 LGSLFKESVGIGFSDYLMKQRMELAKRLLLQPGSRIYEVSQKVGYKNPHYFSKLFKEYAG 518 +G LFK++ G+ F +YL+K RM AK+LL Q R+YEV+++VG+ + YF F++ Sbjct: 454 MGQLFKKTFGVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINK 513 Query: 519 IKPSQYK 525 + P++Y+ Sbjct: 514 MTPTEYR 520 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/124 (37%), Positives = 81/124 (65%), Gaps = 1/124 (0%) Query: 402 FDAVKRLYSLLLDLPVQSEMKKNRQTIRTVLDYINNHLDEEIRLEELAQKVFLTPNYLGS 461 F V++++ +D ++ E + +I L YI+ HLD++I L+++A+ V L P+YL + Sbjct: 131 FGQVEKVWDEKID-AIEKERLSSSDSIHEALHYIDAHLDQKIGLKDVAKSVHLNPSYLSA 189 Query: 462 LFKESVGIGFSDYLMKQRMELAKRLLLQPGSRIYEVSQKVGYKNPHYFSKLFKEYAGIKP 521 LFKE + FS+YL ++R++ AK LL+ I ++++K GY+ YF K+FKE+ G+ P Sbjct: 190 LFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFKEHEGMTP 249 Query: 522 SQYK 525 +QY+ Sbjct: 250 TQYR 253 Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 2 QLHALLVDDEDFVLDGLKEAID-WKKYGINIAGAVNNGREALEFLEHSGITIDIVFTDIK 60 Q L+VDDE GLK ++ W +N+ A + +EA+ L TID++ TDI+ Sbjct: 3 QQTVLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAAS-AKEAITRLNEE--TIDLIITDIR 59 Query: 61 MPVMDGFGLTEALKSAEYPCKIIVLTGHEEFEFAKKAIRYGIFDYLLKPVELESIELTID 120 MP M G L +AL+ IV++ + EFE+A A+ G+ YLLKPV+ E + I+ Sbjct: 60 MPEMSGLHLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKL---IE 116 Query: 121 RLVKVIRTEKEQSQETAEVEHRLNEGLPLIHERLLFS 157 + ++ +KEQ + +VE +E + I + L S Sbjct: 117 AVESALQMKKEQDR-FGQVEKVWDEKIDAIEKERLSS 152 >BH0793 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 508 Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 2/108 (1%) Query: 3 LHALLVDDEDFVLDGLKEAIDWKKYGINIAGAVNNGREALEFLEHSGITIDIVFTDIKMP 62 + +LVDDE +L+GLK IDW + G I NG EALE ++ ++ D++ TDIKMP Sbjct: 2 IRVMLVDDEPLILEGLKHLIDWGQLGYEIVATARNGVEALEIAKY--VSFDLLITDIKMP 59 Query: 63 VMDGFGLTEALKSAEYPCKIIVLTGHEEFEFAKKAIRYGIFDYLLKPV 110 G L AL E + IVL+G +EF F K+ + GI +YLLKP+ Sbjct: 60 EKTGLELIAALNEREKTIRSIVLSGFQEFHFVKQGLTLGIENYLLKPI 107 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 69/121 (57%) Query: 405 VKRLYSLLLDLPVQSEMKKNRQTIRTVLDYINNHLDEEIRLEELAQKVFLTPNYLGSLFK 464 + R LL D +Q K I+TVL +I+ H +++ L+ L + P YLG LF+ Sbjct: 382 IDRCIDLLEDDHLQENEKNYSPIIQTVLQHIHQHFSQDLSLKTLGHSFHINPIYLGQLFQ 441 Query: 465 ESVGIGFSDYLMKQRMELAKRLLLQPGSRIYEVSQKVGYKNPHYFSKLFKEYAGIKPSQY 524 VG F+ YL + R++ AK+LLL R ++ +KVGY + YF K FK+Y + P+++ Sbjct: 442 REVGCSFTKYLNQLRIDRAKKLLLNSYDRAGQIGKKVGYGDATYFYKQFKKYEAMTPTEW 501 Query: 525 K 525 + Sbjct: 502 R 502 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 16/156 (10%) Query: 5 ALLVDDEDFVLDGLKEAIDWKKYGINIAGAVNNGREALEFLEHSGITIDIVFTDIKMPVM 64 ++VDDE V +GLK I W++YG + NG+E F ++ ++ D++ DI+MP + Sbjct: 4 VMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEG--FTKYRQLSPDLMIVDIRMPEV 61 Query: 65 DGFGLTEALKSAEYPCKIIVLTGHEEFEFAKKAIRYGIFDYLLKPVELESIELTIDRLVK 124 DG L E++++ + I+L+GH +F +AKKA+ DYLLKP++ + + ID L K Sbjct: 62 DGLSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDEL---IDSLKK 118 Query: 125 VI-----------RTEKEQSQETAEVEHRLNEGLPL 149 V E+ Q ++ V L EG PL Sbjct: 119 VYGRITRHHQVHELVERVQEKQVEMVLTELLEGTPL 154 Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 428 IRTVLDYINNHLDEEIRLEELAQKVFLTPNYLGSLFKESVGIGFSDYLMKQRMELAKRLL 487 +R ++ I+ + +RLE LA YLG LFK G F+ YL K R+E KRLL Sbjct: 399 LRKMIALIHKDYAKNLRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGKRLL 458 Query: 488 LQPGSRIYEVSQKVGYKNPHYFSKLFKEYAGIKPSQYK 525 Q G ++YEV++K+GY N YF + FK+Y G+ PS ++ Sbjct: 459 -QKGYKVYEVAEKIGYANVDYFHRKFKKYVGVSPSTFR 495 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 37,471,848 Number of extensions: 1606248 Number of successful extensions: 5600 Number of sequences better than 1.0e-05: 246 Number of HSP's gapped: 5662 Number of HSP's successfully gapped: 256 Length of query: 525 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 414 Effective length of database: 25,576,357 Effective search space: 10588611798 Effective search space used: 10588611798 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)