BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0451.0001.p
         (591 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0307 [G] COG2407 L-fucose isomerase and related proteins             82   2e-15
STM0307 [UNTP] COG3678 P pilus assembly/Cpx signaling pathway, p...    82   2e-15

>TM0307 [G] COG2407 L-fucose isomerase and related proteins
          Length = 473

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 121/550 (22%), Positives = 197/550 (35%), Gaps = 94/550 (17%)

Query: 7   KIGIRPTIDGRRRGVRESLEVQTMGMAERVAAFLQDNLRYPDGSSVACVITDSTIGGVKE 66
           ++G+    DGR    RE LE       + +A  L++         V  +     +     
Sbjct: 6   RVGLISFSDGREYVHRE-LEGIVKKFEDEIAKTLEET------GEVEVIRAKEIVWKPSI 58

Query: 67  ASAAQAKFSSANVGVSITVTPCWCYGSETMDMDASIPHAVWGFNGT--ERPGXXXXXXXX 124
           A     + +     V+I     W +   T+      P     F+    + PG        
Sbjct: 59  AKREARRLAEEGAEVTIFNYAVWAFPHFTVLASKFAPGPFLLFSNINPQYPGMVAMLSAA 118

Query: 125 XXXXQKGIPAFGIYGEDVQDSGSEEIPSDVQTKLLRFAKSALAVALMKGNSYLSMGSVSM 184
               Q G   + ++G +++D         V  K++ F ++      ++G  Y   G  SM
Sbjct: 119 GALEQDGTKHYRMWG-NIKDE-------KVLRKVMAFIRAGSTYKKLRGQRYGVFGGRSM 170

Query: 185 GIAGSIVNDQFFQEYLGMRNEYIDMSEFVRRFEEGIYDQEEFARALKWTKENCRI----G 240
           G+  ++ N   + +  G+  E+ID  E VRR +  +   E   +   W +E  +     G
Sbjct: 171 GMYTAVPNVDLWNKIFGVDVEHIDQFEIVRRSQ--LIPDERARKGRLWIEEKAKAVHYDG 228

Query: 241 PDNNPAHLQVSSEEKAVQLETCVKMALIGXXXRDLMIGNPVLAELGFAEEAQGHNALAAG 300
               P  L++  +      E   +M                  EL F            G
Sbjct: 229 KYLTPEKLELQIKSYHAVREIVEEM------------------ELDFV-----------G 259

Query: 301 FQGQRQWTDHFPNGDFMETILNSSFDWNGKRAPYILATENDSLNGVTMLFNYLLTNTAQI 360
            +GQ + T+HF   D  ET LN  +DW G+  P + ATE DS   +TM    L+  T  +
Sbjct: 260 IKGQLELTEHFVTMDVTETFLNDPYDWEGEHEPIVCATEADSDGALTMQIFKLIAKTPVL 319

Query: 361 FADVRTYWSPAAVKRVTGYELQGEAAGGLLHLINSGSAALDGAGEQTRDGKPVIKPFWEI 420
           FADVR Y        V  Y+        +L L NSG+ A   A    R   P        
Sbjct: 320 FADVRHY--------VEEYD--------VLDLCNSGNHATYFAA---RSFDP-------- 352

Query: 421 TDEEVEATLKATQFRAASQEYFRGGGFSTDYLTKGGMPVTMARLNLVKGLGPVLQLAEGY 480
                +  +K  +F   +  YF  GG +  ++   G  VT+ RL    G      +  G 
Sbjct: 353 -----DENMKKVEFYPQTF-YFPAGGAAVKHIAAPG-KVTLGRLTREDGRYR-FTVVPGE 404

Query: 481 TVELPEEVHRTLDERTDPTWPTTWFAPVLTGSGSFSSVYDVMNNWGANHGAISYGHIGAD 540
            V+  EE +  + +     WP   F  + T    F      +  + +NH    YG    +
Sbjct: 405 FVDFGEEKNYEIADSIQNNWPHA-FLKMETPIDEF------LAKYSSNHIHGVYGDYVEE 457

Query: 541 LITLASMLRI 550
           + T   +  I
Sbjct: 458 IKTFCEIASI 467


>STM0307 [UNTP] COG3678 P pilus assembly/Cpx signaling pathway, periplasmic
           inhibitor/zinc-resistance associated protein
          Length = 135

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 0/550 (0%), Positives = 0/550 (0%), Gaps = 94/550 (17%)

Query: 7   KIGIRPTIDGRRRGVRESLEVQTMGMAERVAAFLQDNLRYPDGSSVACVITDSTIGGVKE 66
           +  +                             +Q              IT       + 
Sbjct: 6   RTTLLAATLAGVSFGAF-ATAVPNPPLPAQDPIVQHL------KLTNDQITRIKKLHQQL 58

Query: 67  ASAAQAKFSSANVGVSITVTPCWCYGSETMDMDASIPHAVWGFNGT--ERPGXXXXXXXX 124
            +             ++          +          +                     
Sbjct: 59  ETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIEQQARYYRVKYYFDLSKVL 118

Query: 125 XXXXQKGIPAFGIYGEDVQDSGSEEIPSDVQTKLLRFAKSALAVALMKGNSYLSMGSVSM 184
               ++ +                                                    
Sbjct: 119 TPEQRQQVQQDLAQA--------                                      170

Query: 185 GIAGSIVNDQFFQEYLGMRNEYIDMSEFVRRFEEGIYDQEEFARALKWTKENCRI----G 240
                                                                       
Sbjct: 171 --                                                           228

Query: 241 PDNNPAHLQVSSEEKAVQLETCVKMALIGXXXRDLMIGNPVLAELGFAEEAQGHNALAAG 300
                                                                       
Sbjct: 229 -----------------------------                                259

Query: 301 FQGQRQWTDHFPNGDFMETILNSSFDWNGKRAPYILATENDSLNGVTMLFNYLLTNTAQI 360
                                                                       
Sbjct: 260                                                              319

Query: 361 FADVRTYWSPAAVKRVTGYELQGEAAGGLLHLINSGSAALDGAGEQTRDGKPVIKPFWEI 420
                                                                       
Sbjct: 320 ---------------------------                                  352

Query: 421 TDEEVEATLKATQFRAASQEYFRGGGFSTDYLTKGGMPVTMARLNLVKGLGPVLQLAEGY 480
                                                                       
Sbjct: 353 --------                                                     404

Query: 481 TVELPEEVHRTLDERTDPTWPTTWFAPVLTGSGSFSSVYDVMNNWGANHGAISYGHIGAD 540
                                                                       
Sbjct: 405 -------                                                      457

Query: 541 LITLASMLRI 550
                     
Sbjct: 458            467


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 42,701,997
Number of extensions: 1724211
Number of successful extensions: 2825
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2825
Number of HSP's successfully gapped: 2
Length of query: 591
Length of database: 38,378,431
Length adjustment: 112
Effective length of query: 479
Effective length of database: 25,461,023
Effective search space: 12195830017
Effective search space used: 12195830017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 119 (50.4 bits)