BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0007.p (346 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3791 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, p... 331 8e-91 SA0111 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, p... 277 2e-74 BS_yfiY [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 225 8e-59 slr1319 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 190 3e-48 Cgl0335 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 138 2e-32 >BH3791 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 334 Score = 331 bits (849), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 160/285 (56%), Positives = 209/285 (73%), Gaps = 8/285 (2%) Query: 66 VRTIKHEMGETQITGTPVRIVSLYQGANDAXXXXAYGVKPVGIVESWLEKPVYEYLRADL 125 VR + H MG T I G P RIV+LYQGA DA A+G+ PVG+VESWLE P+YEYLR DL Sbjct: 54 VREVSHAMGVTTIEGKPERIVTLYQGATDATV--AFGMTPVGVVESWLEPPMYEYLRDDL 111 Query: 126 GGIAQIGTEVQPNLEEIYKLKPDVIFANKIRHEAVYDQLSQIAPTVMTGEVYDWKATVKL 185 G+ +G E QPNLEEI KL+PD+I A+++RHE VYDQLS+IAPTV+ V+++K TV+L Sbjct: 112 EGVEFVGQETQPNLEEIAKLQPDLIIASQLRHEEVYDQLSEIAPTVVHETVFEFKETVEL 171 Query: 186 MGEVLNQQDKTAELMGEWDSRVADFK----QKMGDRLPIEATITNFREDHARIFYMGYAG 241 MGE +++++K A+++ WD RV DFK +KMGD P+E ++ NFREDHARI+ G++ Sbjct: 172 MGEAMDEEEKAADILAAWDERVEDFKTKVVEKMGDEWPVEVSVLNFREDHARIYATGFSA 231 Query: 242 GILKELGFTRPEGHDADTWGVQLTSKESIPDMNADVIFNFNSGTDEAAVNKLYTDWTSHP 301 IL++LGF PE LT ESIP+MNADV + F S D+ V K Y +WTSHP Sbjct: 232 IILEDLGFEFPENQKNSDEIFMLTDMESIPEMNADVFYMFMS--DDETVQKTYEEWTSHP 289 Query: 302 LWKNLDAVKNNQVHMVDEVAWNMAGGILSAHLMLDSLYEMFDLPK 346 LW+NLDAVK +QV+MVDE+AWNM GGI +A+LMLD +Y+ F+L K Sbjct: 290 LWENLDAVKADQVYMVDEIAWNMGGGINAANLMLDDIYDRFELEK 334 >SA0111 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 330 Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 150/305 (49%), Positives = 197/305 (64%), Gaps = 22/305 (7%) Query: 58 STEPASEEVRTIKHEMGETQITGTPVRIVSLYQGANDAXXXXAYGVKPVGIVESWLEKPV 117 S++ +E +IKH MG T+I G P R+V+LYQGA D + GVKPVG VESW +KP Sbjct: 29 SSDNKDKETTSIKHAMGTTEIKGKPKRVVTLYQGATDVAV--SLGVKPVGAVESWTQKPK 86 Query: 118 YEYLRADLGGIAQIGTEVQPNLEEIYKLKPDVIFANKIRHEAVYDQLSQIAPTVMTGEVY 177 +EY++ DL +G E PNLEEI KLKPD+I A+K+R+E VYDQLS+IAPTV T V+ Sbjct: 87 FEYIKNDLKDTKIVGQEPAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIAPTVSTDTVF 146 Query: 178 DWKATVKLMGEVLNQQDKTAELMGEWDSRVADF----KQKMGDRLPIEATITNFREDHAR 233 +K T KLMG+ L ++ + +L+ ++D +VA F K K D P++A++ NFR DH R Sbjct: 147 KFKDTTKLMGKALGKEKEAEDLLKKYDDKVAAFQKDAKAKYKDAWPLKASVVNFRADHTR 206 Query: 234 IFYMGYAGGILKELGFTRPE--------GHDADTWGVQLTSKESIPDMNADVIFNFNS-- 283 I+ GYAG IL +LGF R + G D +QLTSKESIP MNAD IF S Sbjct: 207 IYAGGYAGEILNDLGFKRNKDLQKQVDNGKDI----IQLTSKESIPLMNADHIFVVKSDP 262 Query: 284 -GTDEAAVNKLYTDWTSHPLWKNLDAVKNNQVH-MVDEVAWNMAGGILSAHLMLDSLYEM 341 D A V K ++WTS WKNLDAVKNNQV +DE+ WN+AGG S+ ++D LYE Sbjct: 263 NAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSDDLDEITWNLAGGYKSSLKLIDDLYEK 322 Query: 342 FDLPK 346 ++ K Sbjct: 323 LNIEK 327 >BS_yfiY [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 325 Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 121/288 (42%), Positives = 169/288 (58%), Gaps = 12/288 (4%) Query: 65 EVRTIKHEMGET-QITGTPVRIVSLYQGANDAXXXXAYGVKPVGIVESWLEKPVYEYLRA 123 + RT+KH MG + I P RIV L +A A G+KPVG V+SW P Y+YL+ Sbjct: 36 KTRTVKHAMGTSDNIPANPKRIVVLTNEGTEALL--ALGIKPVGAVKSWKGDPWYDYLKD 93 Query: 124 DLGGIAQIGTEVQPNLEEIYKLKPDVIFANKIRHEAVYDQLSQIAPTVMTGEVY-DWKAT 182 D+ G+ +G E +PN+E I +LKPD+I NK+R E +YDQL+ IAPTV + +WK Sbjct: 94 DMKGVKNVGLETEPNVEAIAELKPDLIIGNKVRQEKIYDQLNAIAPTVFAESLAGNWKDN 153 Query: 183 VKLMGEVLNQQDKTAELMGEWDSRVADFKQKMGDRLPIEATITNFREDHARIFYM-GYAG 241 + L +N+ DK E++ ++D RV+D K K+GD+ ++ F +RI+Y + G Sbjct: 154 LTLYANAVNKADKGKEVIADFDKRVSDLKNKLGDQTNKTVSVVRFLSGESRIYYTDSFPG 213 Query: 242 GILKELGFTRPEGH------DADTWGVQLTSKESIPDMNADVIFNFNSGTDEAAVNKLYT 295 IL +LGF RPE D + SKESIPDM+ADV+F F D A N+ + Sbjct: 214 IILDQLGFKRPEKQVELFKKQKDQFTFSTDSKESIPDMDADVLFYFTYKADNAKENEKWA 273 Query: 296 D-WTSHPLWKNLDAVKNNQVHMVDEVAWNMAGGILSAHLMLDSLYEMF 342 + WTS LWKNL AVK+ H VD+V W AGGI +A+ +LD + F Sbjct: 274 NQWTSSSLWKNLKAVKSGNAHEVDDVVWTTAGGIKAANYLLDDIETYF 321 >slr1319 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 315 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/276 (37%), Positives = 157/276 (56%), Gaps = 8/276 (2%) Query: 67 RTIKHEMGETQITGTPVRIVSLYQGANDAXXXXAYGVKPVGIVESWLEKPVYEYLRADLG 126 RTI H MG T + P RIV L A D A GV PVG V+SW P YEYL D+ Sbjct: 38 RTIAHAMGVTAVPNEPQRIVVLTNEATD--MVLALGVTPVGAVKSWSGDPYYEYLAKDML 95 Query: 127 GIAQIGTEVQPNLEEIYKLKPDVIFANKIRHEAVYDQLSQIAPTVMTGEVYD-WKATVKL 185 G+ +G E+QPNLE+I L+PD+I +++R +Y LS IAPTV + + + W+ ++L Sbjct: 96 GVPIVGDEMQPNLEKIVALQPDLIIGSRLRQGQIYKSLSAIAPTVFSETIGESWQDNLRL 155 Query: 186 MGEVLNQQDKTAELMGEWDSRVADFKQKMGDRLPIEATITNFREDHARIFYM-GYAGGIL 244 G+ L+++ + +L+ +WD+RVA +QK+ + + ++ F ARI+ + G IL Sbjct: 156 YGQALDREAEAEQLLNDWDTRVAQMRQKLSAK-DLTISLVRFMPRGARIYLQNSFPGQIL 214 Query: 245 KELGFTRPEGHDADTWGVQLTSKESIPDMNADVIFNF--NSGTDEAAVNKLYTDWTSHPL 302 + +G RP A+ + S E IP M AD +F F + + + W +HPL Sbjct: 215 QAVGLERPASQ-ANHGFAEHVSFEQIPQMEADALFYFIYTGDSGDQTPGSITNPWLNHPL 273 Query: 303 WKNLDAVKNNQVHMVDEVAWNMAGGILSAHLMLDSL 338 W+ L+ V++ + + V +V W AGGI +AHL+LD L Sbjct: 274 WQQLEVVQSGKAYAVSDVVWTTAGGIQAAHLLLDDL 309 >Cgl0335 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 315 Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 149/281 (53%), Gaps = 19/281 (6%) Query: 68 TIKHEMGETQITGTPVRIVSLYQGANDAXXXXAYGVKPVGIVESWLEKPVYEYLRADLGG 127 +++H MG T+I TP R+V + DA A G+ PVG ES E YL +L Sbjct: 47 SVEHAMGTTEIPETPTRVVVIDSPHLDALL--ALGITPVGATESGSENGFPAYLADELKD 104 Query: 128 IAQIGTEVQPNLEEIYKLKPDVIFANKIRHEAVYDQLSQIAPTVMT-GEVYDWKATVKLM 186 +G +PNLE+I L PD+I K+RHEA+YDQLS IAPTVM+ G +W ++ Sbjct: 105 TESVGLTSEPNLEKIAALDPDLIIGAKVRHEAIYDQLSDIAPTVMSEGSGTNWNEQAEIT 164 Query: 187 GEVLNQQDKTAELMGEWDSRVADFKQKMGDRLPIEATITNFREDHARIF-YMGYAGGILK 245 +N+ D+ +L+ + D+R + +++G A++ FR D+ R++ ++G +L+ Sbjct: 165 AAAVNKSDEMDKLISDLDTRATELGEEIGADGQT-ASMVRFRTDNFRLYGPETFSGSVLE 223 Query: 246 ELGFTRPEGHDADTWGVQLTSKESIPDMNADVIFNFNSGTDEAAVNKLYTDWTSHP---- 301 ++GF E D + + + S E+ ++ D+IF G+ EA T++P Sbjct: 224 QVGFDLGE-RDWNEYSMMELSSENFGQIDGDLIFYTIPGSPEA---------TTYPKISE 273 Query: 302 LWKNLDAVKNNQVHMVDEVAWNMAGGILSAHLMLDSLYEMF 342 LW + AV+ + + ++ W + G+L A+ +LD L E Sbjct: 274 LWVDSPAVRQGRTYEFEDETWMVGIGVLGANEILDDLEETL 314 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,121,845 Number of extensions: 941614 Number of successful extensions: 3356 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 3305 Number of HSP's successfully gapped: 40 Length of query: 346 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 239 Effective length of database: 26,037,693 Effective search space: 6223008627 Effective search space used: 6223008627 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)