BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0006.p (331 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yfiZ [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 201 2e-51 all2586 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 185 1e-46 slr1316 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 184 1e-46 BS_yfmD [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 158 1e-38 SA0110 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 147 2e-35 >BS_yfiZ [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 333 Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/309 (39%), Positives = 165/309 (53%), Gaps = 1/309 (0%) Query: 19 AFTASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLM 78 A AS++ G T SW + AFT ++ G + +I++ RL RA++A VGASL+ AG LM Sbjct: 23 AVCASVVYGYTGTSWRQVYQAFTSFN-GTNEHVIIKDVRLPRALVATVVGASLAAAGALM 81 Query: 79 QAMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSL 138 QA+T+NPLASP +FGI++GA SL Sbjct: 82 QALTKNPLASPGIFGINAGAGFFIVAGSFFLHIQSPQALVWSSFLGAAFTAAIVYAAGSL 141 Query: 139 GRDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLP 198 GR+GLTP+KL LAG+A+ A+F+S TQ LL +N+ L VLFWL GS+ GRSL+ + + P Sbjct: 142 GREGLTPIKLTLAGAAMAAMFSSLTQGLLSVNELELAQVLFWLTGSVQGRSLDLLMTMFP 201 Query: 199 FIVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 258 + A +I LG+ +NLL GED+AK F Sbjct: 202 YAAAALVICFFLGQKINLLVMGEDVAKGLGQKTGLLKFVMALCVVMLAGSAVAIAGPISF 261 Query: 259 IGLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVP 318 IG+ +PH AR + GNDYRWVLPFS I P EVP+GVMTA IG+P Sbjct: 262 IGIIIPHFARFVVGNDYRWVLPFSAVLGAILLVCADIGARYIIMPQEVPVGVMTAIIGMP 321 Query: 319 FFIHVARKG 327 F+++AR+G Sbjct: 322 VFVYIARRG 330 >all2586 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 343 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 158/303 (52%), Gaps = 1/303 (0%) Query: 23 SLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLMQAMT 82 S+ LG + + ++ +F +D G+ + L+++T RL R+++AL VG+SL+VAG LMQ +T Sbjct: 37 SVTLGAAEIPLNKILESFITFD-GSYEHLVIQTVRLPRSLVALLVGSSLAVAGALMQGLT 95 Query: 83 RNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLGRDG 142 RNPLA P + GI SGA + SLG+ G Sbjct: 96 RNPLADPGILGIESGAALAVVTTIFVFGSSSLGLLTTVAFLGAGVTAMLVYFLGSLGKGG 155 Query: 143 LTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPFIVF 202 TP+ L +AG+A+TAL +S T A+L+++ L+++ FWLAGS++GR + LPF++ Sbjct: 156 ATPLNLTVAGAALTALISSLTTAILIVSQRTLEEIRFWLAGSLAGRDFNILLSALPFVMI 215 Query: 203 AGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGLF 262 ++A +LGR + ++ GED+AK FIGL Sbjct: 216 GLVVAFALGRQITTMSLGEDMAKGLGQQTAWVKITTAISVVLLAGSSVSLAGPIGFIGLV 275 Query: 263 VPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPFFIH 322 VPHM R DYRW+LP+S ++P E+P+GVMTA +G PFF++ Sbjct: 276 VPHMVRFFIKADYRWILPYSAVVGATLLLVADVAARVLLKPQELPVGVMTALVGAPFFVY 335 Query: 323 VAR 325 +A+ Sbjct: 336 LAK 338 >slr1316 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 343 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 3/305 (0%) Query: 22 ASLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVAGTLMQAM 81 +S++LG +S T+ A +D G+ D LI+RT RL RA++A+ VGASL+VAG + Q + Sbjct: 39 SSILLGAADISPQTVWQALFQFD-GSTDHLIIRTVRLPRAILAIVVGASLAVAGAITQGL 97 Query: 82 TRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLGRD 141 TRNPLA+PD+ G++ GA +LGR Sbjct: 98 TRNPLAAPDILGVNVGA--SLAVVLATFIGGDGSNQWAFAFIGAAIAAVVVYGLGTLGRS 155 Query: 142 GLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPFIV 201 GLTP+KLV+AG+A++ S T +L++N L D+ FWLAGS+ G+ + +LP+I+ Sbjct: 156 GLTPIKLVIAGAALSYFLGSLTTGILLLNQRTLDDIRFWLAGSLGGQDWNGLTAVLPYIM 215 Query: 202 FAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGL 261 + ++SLGR L LLT GE++A+ F+GL Sbjct: 216 VGLVSSLSLGRQLTLLTFGEEVAQGLGLKTAWVKLGAATVLVLLAGSAVALAGPIGFVGL 275 Query: 262 FVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPFFI 321 VPH+ R G DYRW+LP++ I P E+P+G+MTA +G PFFI Sbjct: 276 IVPHVVRFGVGVDYRWILPYAMVMGGIFLSVADMAARLLISPQELPVGIMTALVGAPFFI 335 Query: 322 HVARK 326 ++AR Sbjct: 336 YLARS 340 >BS_yfmD [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 333 Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 142/282 (50%), Gaps = 4/282 (1%) Query: 46 GAVDQLIVRTERLARAVIALAVGASLSVAGTLMQAMTRNPLASPDVFGISSGAIXXXXXX 105 G+ +QLI+ T RL R +I + VGASL+VAG LMQAMTRNPLASP +FG+++GA Sbjct: 52 GSKEQLIISTLRLPRTLIGVFVGASLAVAGALMQAMTRNPLASPQIFGVNAGA---SLFV 108 Query: 106 XXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSLGRDGLTPVKLVLAGSAITALFASCTQA 165 S G+TPVKL L+G A+ +S TQA Sbjct: 109 VASLVILPASPYSSVIFAFAGAAAGGAIVYMIASSGGMTPVKLALSGMAVHLFLSSMTQA 168 Query: 166 LLVMNDSGLQDVLFWLAGSISGRSLENVRPLLPFIVFAGLIAMSLGRALNLLTTGEDIAK 225 ++++N+SG +DVL+W+ G+I G + ++V + PF V +A+ ++++L G++ AK Sbjct: 169 IIILNESG-EDVLYWMTGAIDGSNWQDVITIAPFSVIGIGLALVFSGSVSVLGLGDETAK 227 Query: 226 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIGLFVPHMARGLAGNDYRWVLPFSXXX 285 F+GL VPH+ R L G Y++VLPFS Sbjct: 228 GLGQNMNGIRILISLIILILSGASVAVAGPIGFVGLLVPHIVRKLIGEHYQYVLPFSALF 287 Query: 286 XXXXXXXXXXXXXXXIQPSEVPIGVMTAAIGVPFFIHVARKG 327 P E P+G++TA IG PFF+++ARKG Sbjct: 288 GAILLVYADVLARWIAFPYESPVGIVTAIIGTPFFLYLARKG 329 >SA0110 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 331 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 159/313 (50%), Gaps = 2/313 (0%) Query: 17 CGAFTA--SLMLGRTVMSWSTLVLAFTDYDAGAVDQLIVRTERLARAVIALAVGASLSVA 74 C A A SLM+G T++S T++ A ++D+ +V R +R +IAL GA+L+V+ Sbjct: 15 CLAIVAILSLMIGNTLVSPGTVIQALFNFDSENDLHDVVTGARASRTIIALLTGAALAVS 74 Query: 75 GTLMQAMTRNPLASPDVFGISSGAIXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXX 134 G LMQA+TRNP+ASP +FG+++GA+ Sbjct: 75 GLLMQALTRNPIASPGLFGVNAGAVFFVIFSITFIQIQSFKMIVVIAFLGAIVVTILVVA 134 Query: 135 XXSLGRDGLTPVKLVLAGSAITALFASCTQALLVMNDSGLQDVLFWLAGSISGRSLENVR 194 + +P +++LAG+AI LF + TQ +L+MN++ LQ +LFWL+GS+S R++ ++ Sbjct: 135 LGMFRQTLFSPHRVILAGAAIAMLFTAFTQGILIMNETDLQGLLFWLSGSVSLRNIWDIP 194 Query: 195 PLLPFIVFAGLIAMSLGRALNLLTTGEDIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 254 ++P ++ LIA S+ +N+L T +DIA Sbjct: 195 WIIPLVLILILIAFSMAAHINILMTSDDIATGLGQNIKLIKWMIIMLISMLAGISVAVAG 254 Query: 255 XXXFIGLFVPHMARGLAGNDYRWVLPFSXXXXXXXXXXXXXXXXXXIQPSEVPIGVMTAA 314 F+GL VP++++ L +Y++++PF+ I+P E+PIGV+TA Sbjct: 255 SIVFVGLIVPNISKRLLPPNYKYLIPFTALAGAILMIISDIVARIIIKPLELPIGVVTAV 314 Query: 315 IGVPFFIHVARKG 327 IG I++ +KG Sbjct: 315 IGAIVLIYIMKKG 327 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,897,827 Number of extensions: 466618 Number of successful extensions: 1736 Number of sequences better than 1.0e-05: 128 Number of HSP's gapped: 1464 Number of HSP's successfully gapped: 224 Length of query: 331 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 224 Effective length of database: 26,037,693 Effective search space: 5832443232 Effective search space used: 5832443232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)