BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0449.0005.p
         (127 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3789 [P] COG0609 ABC-type Fe3+-siderophore transport system, p...   106   9e-24
BS_yfhA [P] COG0609 ABC-type Fe3+-siderophore transport system, ...    84   5e-17
slr1317 [P] COG0609 ABC-type Fe3+-siderophore transport system, ...    76   1e-14
all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, ...    69   1e-12
SA1977 [P] COG0609 ABC-type Fe3+-siderophore transport system, p...    68   3e-12

>BH3789 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease
           component
          Length = 346

 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 74/111 (66%)

Query: 3   MIRLVNPRTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFGS 62
           M +L+  RTK   + FQ+ER TV    +   + +         G+ +I P DV++ +FG 
Sbjct: 1   MSKLLTVRTKSGSISFQVERRTVVVFGLLLLVSLLLFIGSLSVGSTFIPPHDVIKQLFGY 60

Query: 63  SQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGIT 113
             GEYDF I TLRLPRVL A +VG+ALGV+G ILQG++RNPLA+PDIIGIT
Sbjct: 61  GTGEYDFTINTLRLPRVLLAFMVGAALGVAGLILQGIVRNPLAAPDIIGIT 111


>BS_yfhA [P] COG0609 ABC-type Fe3+-siderophore transport system, permease
           component
          Length = 444

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 4/71 (5%), Positives = 12/71 (16%)

Query: 44  GWGNGYISPPDVLRTIFGSSQGEYDFIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNP 103
              +G      + R        +     M           +      +       +    
Sbjct: 34  TAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAV 93

Query: 104 LASPDIIGITG 114
            A+   +    
Sbjct: 94  AATQQGVFSFL 104


>slr1317 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease
           component
          Length = 349

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)

Query: 10  RTKKSGVYFQMERTTVWALAIGFALYVTAVAAGTGWGNGYISPPDVLRTIFG-SSQGEYD 68
           R +   + F+++R     + +  AL +        WG   + P  +L+ IFG S+  +++
Sbjct: 11  RLRSLPLSFRLDRHVPLVMGLLTALALLLFILNISWGEYPVPPLAMLQAIFGLSTDADHE 70

Query: 69  FIIMTLRLPRVLTALLVGSALGVSGAILQGVIRNPLASPDIIGITG 114
           F++ TLRLPR L ALLVG  L ++G ILQG+ RNPLA+P+IIG+  
Sbjct: 71  FVVRTLRLPRSLVALLVGMGLAIAGGILQGITRNPLAAPEIIGVNA 116


>all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease
           component
          Length = 346

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 44  GWGNGYISPPDVLRTIFGSSQGEYD--FIIMTLRLPRVLTALLVGSALGVSGAILQGVIR 101
           G G   I+P D+++T+ G   G  D  F+I  LRLPR L A +VG AL V+G I QG+ R
Sbjct: 41  GRGEYPIAPLDIIKTVLGIDTGNPDHAFVIYNLRLPRTLVACMVGVALAVAGTIFQGITR 100

Query: 102 NPLASPDIIGITG 114
           NPLA P IIGI  
Sbjct: 101 NPLADPGIIGINA 113


>SA1977 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease
           component
          Length = 322

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query: 34  LYVTAVAAGTGWGNGYISPPDVLRTIFGSSQGEYDFIIMTLRLPRVLTALLVGSALGVSG 93
           L + ++      G+  I P D ++ IF     + DFI+   R+PR L  +++GS+L +SG
Sbjct: 16  LLIVSIFISLCVGSVMIHPIDAIKGIFT----QDDFILNEYRIPRTLLGIIIGSSLAISG 71

Query: 94  AILQGVIRNPLASPDIIGIT 113
           AI+Q VIRNPLASPD+IGI+
Sbjct: 72  AIIQAVIRNPLASPDVIGIS 91


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,513,801
Number of extensions: 379371
Number of successful extensions: 1087
Number of sequences better than 1.0e-05: 123
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 124
Length of query: 127
Length of database: 38,378,431
Length adjustment: 93
Effective length of query: 34
Effective length of database: 27,652,369
Effective search space: 940180546
Effective search space used: 940180546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)