BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0004.p (219 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3789 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 219 2e-57 all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 183 1e-46 BS_yfhA [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 183 2e-46 slr1317 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 169 4e-42 AGl2295 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 147 1e-35 >BH3789 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 346 Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/217 (51%), Positives = 151/217 (69%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 VSI LP AA+ GA +VS+++Y L+W KGVTPIRL+LIGIG++AA KA T+M+V+S Sbjct: 129 VSITWLPFAAIIGAGLVSIVIYLLAWNKGVTPIRLILIGIGVTAAMKAFVTMMLVLSDMA 188 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQ 120 +K+YLW+TGS+YGA W +V +LP V IPL + A++L +ELGDD+A LGV VQ Sbjct: 189 VTTKSYLWLTGSLYGAHWQDVYAMLPWVAISIPLTMLMAQTLGVKELGDDIAQGLGVKVQ 248 Query: 121 RHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFL 180 +RF L+ LIAPH++R GR + L+++S+ GG++V + Sbjct: 249 MYRFALLFTSVALAGSAVAFAGGIQFVGLIAPHISRMLVGRSYTSLVIVSSFIGGIIVVM 308 Query: 181 ADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRN 217 AD++ART F PLDIPAGVFTA IGAP+FIY+L+RNRN Sbjct: 309 ADIVARTAFLPLDIPAGVFTAAIGAPYFIYLLYRNRN 345 >all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 346 Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 99/216 (45%), Positives = 134/216 (62%) Query: 3 IKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAISA 62 I LP +A AGAL+++ L+Y L+W G +P+ +L+G+GLSA A A T+LMI S Sbjct: 131 IYTLPLSAFAGALLMAGLIYSLAWNNGSSPVLFILMGVGLSAIAGAFTSLMITFGDIYSV 190 Query: 63 SKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQRH 122 S A +W+ GSVYG +W+ V + LP ++ +P+AL AR LN LGDDVA LG V+ Sbjct: 191 SDALVWLAGSVYGRTWEQVFSFLPWLIVFVPMALTLARHLNTLNLGDDVAKGLGTRVEWQ 250 Query: 123 RFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFLAD 182 R +LVL+ LIAPHL R+ G GLL SAL GG+LV +AD Sbjct: 251 RGLLVLVGVALAGAGVATAGMIGFVGLIAPHLGRQLVGTNHQGLLPTSALLGGMLVVVAD 310 Query: 183 LIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 + RTLF P++IP GV TA +GAP+F+Y+L RNR + Sbjct: 311 FLGRTLFAPIEIPCGVVTAAVGAPYFLYLLIRNRKK 346 >BS_yfhA [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 444 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 17/220 (7%), Positives = 41/220 (18%), Gaps = 4/220 (1%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 + A+ + L + + + + +++ G + A + Sbjct: 126 PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNS 185 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFA--RSLNAQELGDDVAGSLGVT 118 A + ++ ++ L D G + Sbjct: 186 KPFIAINCGALPEQLLESELFGHAR--GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP 243 Query: 119 VQRHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLV 178 +Q ++ + R + L L Sbjct: 244 LQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303 Query: 179 FLADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 A L A PF + Sbjct: 304 IPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 >slr1317 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 349 Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 137/218 (62%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 +S LLP AA G L ++ +Y L+W +G P+RL+L+GIGL+A A + T+LM+ Sbjct: 132 ISPSLLPVAAFCGGLTAAIAIYVLAWNQGSAPVRLILVGIGLAALASSLTSLMVTFGEIS 191 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQ 120 S+A +W+TGSV+G W+++L +LP + IPL+L AR L+ LGD++A LG V+ Sbjct: 192 VVSQALVWLTGSVHGRGWEHLLPLLPWLALFIPLSLALARELDTLNLGDNLARGLGSRVE 251 Query: 121 RHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFL 180 R +L++ L+APHLAR G GG++ ++ALTG + L Sbjct: 252 WMRGLLLVCSVALAGSCVATAGNIGFVGLMAPHLARHLVGPSHGGMIPVAALTGACITEL 311 Query: 181 ADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 ADLI RT+F P++IP GV TA +GAP+F+++L+RNRNQ Sbjct: 312 ADLIGRTVFAPIEIPCGVITAIVGAPYFLWLLYRNRNQ 349 >AGl2295 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 62 Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 0/219 (0%), Positives = 0/219 (0%), Gaps = 4/219 (1%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 Sbjct: 119 178 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLAL--YFARSLNAQELGDDVAGSLGVT 118 Sbjct: 179 -- 236 Query: 119 VQRHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLV 178 Sbjct: 237 296 Query: 179 FLADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRN 217 Sbjct: 297 335 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,389,620 Number of extensions: 505792 Number of successful extensions: 2200 Number of sequences better than 1.0e-05: 139 Number of HSP's gapped: 1964 Number of HSP's successfully gapped: 150 Length of query: 219 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 117 Effective length of database: 26,614,363 Effective search space: 3113880471 Effective search space used: 3113880471 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 114 (48.5 bits)