BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0003.p (294 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yusV [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 387 e-107 BH1039 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo... 375 e-104 all2584 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 335 4e-92 SMa1741 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 298 8e-81 VC0779 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo... 295 7e-80 >BS_yusV [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 275 Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust. Identities = 177/271 (65%), Positives = 219/271 (80%) Query: 11 LATLEARGLTVSYGSKTVIQNMNVQIPKGRITVLIGGNGCGKSTLLRTLARLLKPGGGEV 70 ++ + L++ YG +I +N+ IPKG ITV IG NGCGKSTLLR+LARL+KP GG V Sbjct: 3 MSAISTETLSLGYGDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSV 62 Query: 71 LLDGGRIARLSTREVAKAMAILPQGPTAPEGLTVRQLVRQGRYPHQGWLKAWSEEDEAMV 130 LL+G IA+L T+EVAK +AILPQGP+APEGLTV QLV+QGRYP+Q WLK WS+EDE V Sbjct: 63 LLEGRAIAKLPTKEVAKELAILPQGPSAPEGLTVHQLVKQGRYPYQNWLKQWSKEDEEAV 122 Query: 131 RSALEAAQVADLADHTVDSLSGGQRQRVWIAMSLAQGTDLLLLDEPTTYLDLSHQVEILD 190 AL+A ++ D+AD VDSLSGGQRQR WIAM+LAQ TD++LLDEPTTYLD++HQ+EILD Sbjct: 123 ERALKATKLEDMADRAVDSLSGGQRQRAWIAMTLAQETDIILLDEPTTYLDMTHQIEILD 182 Query: 191 MLYELNERQGRTIVMVLHDLNLACRYAHHMVAVHAGNIYAEGAPESIITPETVKAVFQLD 250 +L+ELNE++ RTIVMVLHDLNLACRYAHH+VA+ IYAEG PE +IT + V+ VF ++ Sbjct: 183 LLFELNEKEDRTIVMVLHDLNLACRYAHHLVAIKDKRIYAEGRPEEVITCDLVQNVFSMN 242 Query: 251 CEVIRDPLFGTPLCIPHGKGRRIAAEAVTGS 281 C+V +DPLFGTPLCIPHG+GR I EA S Sbjct: 243 CQVTQDPLFGTPLCIPHGRGRCIVQEAAFTS 273 >BH1039 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 271 Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust. Identities = 170/266 (63%), Positives = 216/266 (81%) Query: 11 LATLEARGLTVSYGSKTVIQNMNVQIPKGRITVLIGGNGCGKSTLLRTLARLLKPGGGEV 70 + ++E + LT+ Y +I+ +++ IPKG ITVLIGGNGCGKSTLLR+LARLLKP G V Sbjct: 1 MFSIETKNLTLGYDDTIIIEELDLNIPKGEITVLIGGNGCGKSTLLRSLARLLKPQSGAV 60 Query: 71 LLDGGRIARLSTREVAKAMAILPQGPTAPEGLTVRQLVRQGRYPHQGWLKAWSEEDEAMV 130 LL+G I +L+T+EVA +AILPQGP APEGLTV QL++QGRYPHQG K W+ +DE V Sbjct: 61 LLEGSSIQQLATKEVATKLAILPQGPEAPEGLTVYQLIKQGRYPHQGLFKKWTSKDEEKV 120 Query: 131 RSALEAAQVADLADHTVDSLSGGQRQRVWIAMSLAQGTDLLLLDEPTTYLDLSHQVEILD 190 ALEA ++ +LAD VD+LSGGQRQR WIAM+LAQ T+++LLDEPTTYLDL+HQ+EILD Sbjct: 121 MQALEATRLTELADRPVDALSGGQRQRAWIAMTLAQDTEIILLDEPTTYLDLTHQIEILD 180 Query: 191 MLYELNERQGRTIVMVLHDLNLACRYAHHMVAVHAGNIYAEGAPESIITPETVKAVFQLD 250 +L+ELNER+ RTIVMVLHDLNLACRYAHH++AV +YA+G PE +I+ E V+ VF+++ Sbjct: 181 LLFELNEREKRTIVMVLHDLNLACRYAHHLIAVKDRTVYAQGKPEEVISCELVRHVFEME 240 Query: 251 CEVIRDPLFGTPLCIPHGKGRRIAAE 276 C+V DPLFGTPLCIP+GKGR I + Sbjct: 241 CQVTSDPLFGTPLCIPYGKGRCIVKD 266 >all2584 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 289 Score = 335 bits (860), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 153/256 (59%), Positives = 198/256 (77%) Query: 14 LEARGLTVSYGSKTVIQNMNVQIPKGRITVLIGGNGCGKSTLLRTLARLLKPGGGEVLLD 73 L + L+++Y +I+++N+ IP G+I+ L+G NGCGKSTLLR LARLLKP GG V LD Sbjct: 28 LSTQSLSLAYDGVPIIRDLNLAIPTGKISALVGANGCGKSTLLRGLARLLKPYGGTVHLD 87 Query: 74 GGRIARLSTREVAKAMAILPQGPTAPEGLTVRQLVRQGRYPHQGWLKAWSEEDEAMVRSA 133 G I L+T+EVAK + ILPQGP APEGLTV+ LV QGRYP+Q WL+ WSE+DE +V+ A Sbjct: 88 GQSIFSLATKEVAKQLGILPQGPVAPEGLTVKDLVGQGRYPYQNWLQQWSEKDEIIVQQA 147 Query: 134 LEAAQVADLADHTVDSLSGGQRQRVWIAMSLAQGTDLLLLDEPTTYLDLSHQVEILDMLY 193 LE + LAD +D+LSGGQRQR WIAM+LAQ TD+LLLDEPTT+LDL+HQ+E+LD+LY Sbjct: 148 LEITNLLSLADRALDTLSGGQRQRAWIAMALAQDTDILLLDEPTTFLDLAHQIEVLDLLY 207 Query: 194 ELNERQGRTIVMVLHDLNLACRYAHHMVAVHAGNIYAEGAPESIITPETVKAVFQLDCEV 253 ELN+ Q RTIVMVLHDLN ACRYA ++V V G I+ G P+ ++T E V+ VF L C + Sbjct: 208 ELNQHQERTIVMVLHDLNQACRYADYLVVVKQGRIFTAGEPKDVMTEEMVQEVFGLQCRI 267 Query: 254 IRDPLFGTPLCIPHGK 269 + DP+ GTP+C+P G+ Sbjct: 268 VSDPVVGTPMCVPIGR 283 >SMa1741 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 280 Score = 298 bits (762), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 139/269 (51%), Positives = 187/269 (69%) Query: 14 LEARGLTVSYGSKTVIQNMNVQIPKGRITVLIGGNGCGKSTLLRTLARLLKPGGGEVLLD 73 L A GLT Y ++ +++ IP +ITV++G N CGKST LRTL+RL+ P G+VLLD Sbjct: 6 LVASGLTAGYDKTEILHALDLTIPPRKITVIVGANACGKSTFLRTLSRLIAPSKGQVLLD 65 Query: 74 GGRIARLSTREVAKAMAILPQGPTAPEGLTVRQLVRQGRYPHQGWLKAWSEEDEAMVRSA 133 G I R +R++A+ + +LPQ P APEG+TV LV +GR+PHQ W+ D+ V SA Sbjct: 66 GKSIHRTPSRDLARTLGLLPQSPIAPEGITVVDLVSRGRHPHQSLFSGWTRRDDEAVDSA 125 Query: 134 LEAAQVADLADHTVDSLSGGQRQRVWIAMSLAQGTDLLLLDEPTTYLDLSHQVEILDMLY 193 L A + DLAD +D LSGGQRQRVWIAM+LAQ TD+LLLDEPTT+LD++HQ+E+LD+L Sbjct: 126 LRATKTFDLADRPIDELSGGQRQRVWIAMALAQQTDILLLDEPTTFLDINHQIEVLDLLT 185 Query: 194 ELNERQGRTIVMVLHDLNLACRYAHHMVAVHAGNIYAEGAPESIITPETVKAVFQLDCEV 253 +LN + T+VMVLHDLNLA RYA H+VA+ G ++ G PE ++T ETV+ VF LD V Sbjct: 186 DLNSARRTTVVMVLHDLNLAARYADHLVAIAGGRVHISGTPEEVLTEETVRHVFGLDSRV 245 Query: 254 IRDPLFGTPLCIPHGKGRRIAAEAVTGSP 282 I DP G P+ +P G+ R + + +P Sbjct: 246 ISDPTSGRPIMLPIGRHRTAVIDDMGDAP 274 >VC0779 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 279 Score = 295 bits (754), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 139/258 (53%), Positives = 183/258 (70%) Query: 14 LEARGLTVSYGSKTVIQNMNVQIPKGRITVLIGGNGCGKSTLLRTLARLLKPGGGEVLLD 73 L+ L++ Y K+V +++ IP G+ +V++G NGCGKSTLL++L RLLKP G+VLLD Sbjct: 21 LKTERLSLGYEGKSVCDALDLAIPHGKFSVIVGPNGCGKSTLLKSLCRLLKPLAGQVLLD 80 Query: 74 GGRIARLSTREVAKAMAILPQGPTAPEGLTVRQLVRQGRYPHQGWLKAWSEEDEAMVRSA 133 G I +L T+ VAK + +LPQ PEG+ V LV +GRYPHQG + WS DE V A Sbjct: 81 GQNIHQLPTKVVAKQLGLLPQSALTPEGIKVVDLVSRGRYPHQGLFRQWSRVDERAVEEA 140 Query: 134 LEAAQVADLADHTVDSLSGGQRQRVWIAMSLAQGTDLLLLDEPTTYLDLSHQVEILDMLY 193 + A V +LA H+VD LSGGQRQRVW+AM+LAQ T LLLDEPTTYLD++HQ+E+LD+ + Sbjct: 141 MRATHVHELAQHSVDQLSGGQRQRVWVAMALAQQTPYLLLDEPTTYLDIAHQIELLDLFW 200 Query: 194 ELNERQGRTIVMVLHDLNLACRYAHHMVAVHAGNIYAEGAPESIITPETVKAVFQLDCEV 253 LN +QG T+V VLHDLN ACRYA H++ + G I A+G P S++TP VK VF +DC V Sbjct: 201 RLNRQQGHTLVAVLHDLNQACRYADHLIVLQEGKIVAQGDPHSLVTPALVKQVFGIDCVV 260 Query: 254 IRDPLFGTPLCIPHGKGR 271 + DP+ TPL IP+ R Sbjct: 261 MPDPISCTPLIIPYSLKR 278 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,020,386 Number of extensions: 882282 Number of successful extensions: 10539 Number of sequences better than 1.0e-05: 2137 Number of HSP's gapped: 8260 Number of HSP's successfully gapped: 2352 Length of query: 294 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 188 Effective length of database: 26,153,027 Effective search space: 4916769076 Effective search space used: 4916769076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)