BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0023.p (672 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 119 2e-26 BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 115 2e-25 MA0019 [NT] COG0840 Methyl-accepting chemotaxis protein 108 2e-23 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 103 8e-22 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 91 7e-18 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 0/543 (0%), Positives = 0/543 (0%), Gaps = 17/543 (3%) Query: 128 GLDVRDQDYFQQAL--QGKEAVSEVLFSKESNQHVVAIARPLEHDGHITGVLIGTVVFNS 185 Sbjct: 131 --- 187 Query: 186 LSSPVAEVKIGDSGYGYMTDRTGLIVYHPDQGKILKETLDGNSNKELNALVQVMKSGKAS 245 Sbjct: 188 --------- 238 Query: 246 DGFYTYEGVHKYMSF--QPAGNWVVATTANVQDYMAPATEIRNTTXXXXXXXXXXXXXXX 303 Sbjct: 239 298 Query: 304 XXXTTRNIVHPIIKLEQAMSRAGEGNLTVHTSIRSGDELQELSEAFNTMIDKQKAIIEKV 363 Sbjct: 299 - 357 Query: 364 RAGSVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXX 423 Sbjct: 358 417 Query: 424 XXXXXKAAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVS 483 Sbjct: 418 477 Query: 484 TIIGTIXXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVS 543 Sbjct: 478 537 Query: 544 DMVSRITQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVA 603 Sbjct: 538 597 Query: 604 TSDQIIKLIDSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEK 663 Sbjct: 598 657 Query: 664 FII 666 Sbjct: 658 660 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 0/559 (0%), Positives = 0/559 (0%), Gaps = 20/559 (3%) Query: 112 AGTDGQVLLTSSPENPG-LDVRDQDYFQQAL--QGKEAVSEVLFSKESNQHVVAIARPLE 168 Sbjct: 114 - 172 Query: 169 HDGHITGVLIGTVVFNSLSSPVAEVKIGDSGYGYMTDRTGLIVYHPDQGKILKETLDGNS 228 Sbjct: 173 ----- 227 Query: 229 NKELNALVQVMKSGKASDGFYTYEGVHKYMSF---QPAGNWVVATTANVQDYMAPATEIR 285 Sbjct: 228 ------- 280 Query: 286 NTTXXXXXXXXXXXXXXXXXXTTRNIVHPIIKLEQAMSRAGEGNLTVHTSIRSGDELQEL 345 Sbjct: 281 - 339 Query: 346 SEAFNTMIDKQKAIIEKVRAGSVSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXX 405 Sbjct: 340 399 Query: 406 XXXXXXXXXXXXXXXXXXXXXXXKAAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSST 465 Sbjct: 400 459 Query: 466 QETEEQLQAVSELSDQVSTIIGTIXXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVR 525 Sbjct: 460 519 Query: 526 KLSDETHKQATEISALVSDMVSRITQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVE 585 Sbjct: 520 579 Query: 586 LITGSVKEILDITQDEVATSDQIIKLIDSMGSISELAAINSENVSSATEEQAATVTNFAA 645 Sbjct: 580 639 Query: 646 SAQEVSAMANELEILVEKF 664 Sbjct: 640 658 >MA0019 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 739 Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/352 (24%), Positives = 161/352 (45%) Query: 313 HPIIKLEQAMSRAGEGNLTVHTSIRSGDELQELSEAFNTMIDKQKAIIEKVRAGSVSLXX 372 PI +L +A + EG+L V S E+ +LSEAF M++ +++I++++ GS+ L Sbjct: 374 KPIYELLEAADKISEGDLDVDIKGSSRSEIYQLSEAFKAMVENLRSLIKEIQEGSLHLAT 433 Query: 373 XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXXXXXXXKAAA 432 GAE Sbjct: 434 LSEEMSSSSEEVASASRRISETAGEISNGAEMQSTKIVDITHAMQDMTHNIQEVADNTQK 493 Query: 433 TSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIGTIXXX 492 S + ++ N+ D + M+ I SS TE ++ + S Q++ II I Sbjct: 494 VSKSTNLVNETVSNIGNVSRDVLSKMDLIRSSVAGTEVVIKELDSKSQQINEIITLITRI 553 Query: 493 XXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVSRITQA 552 GEHGRGFSVVA+EVRKL++E+ A IS L+ ++ I+ Sbjct: 554 ADQTNMLALNAAIEAARAGEHGRGFSVVADEVRKLAEESGSAAQNISRLIDEIRESISDT 613 Query: 553 VDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQIIKLI 612 V+S+ + + V+ G V+E I++++ IT ++++ T+++ A+ ++I + Sbjct: 614 VESIEASKKNVKNGSISVSEEVEMVTGIVSTINEITNMIEDVAAATEEQSASIEEITSTL 673 Query: 613 DSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEKF 664 + + SISE +A ++ ++A EEQ+A+++ A+ A ++S + +++ EKF Sbjct: 674 EDISSISEQSAAGTQETAAALEEQSASMSELASMANDLSLLGEKMKKATEKF 725 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 159/355 (44%), Gaps = 1/355 (0%) Query: 311 IVHPIIKLEQAMSRAGEGNLTV-HTSIRSGDELQELSEAFNTMIDKQKAIIEKVRAGSVS 369 I P+ +L + +G+LT I++ DE+ +L+E+F M + + +I+++ + Sbjct: 3 ITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNADQ 62 Query: 370 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAEXXXXXXXXXXXXXXXXXXXXXXXXXK 429 + GA+ Sbjct: 63 VAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMTDG 122 Query: 430 AAATSGNADVTNQAAQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIGTI 489 A NA++T A G V +TV+ M +I S + +++ +Q +S+ S+ + I+ I Sbjct: 123 AKQIESNANLTLTYANEGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILDVI 182 Query: 490 XXXXXXXXXXXXXXXXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVSRI 549 GEHG+GF+VVAEEVRKL++E+ + +I L+ +MV Sbjct: 183 QSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVKET 242 Query: 550 TQAVDSMRGATEAVEGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQII 609 +V+ M E V G++ +T F I+ S++ +T V+ + +T++ S ++ Sbjct: 243 NNSVEKMGLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTEVA 302 Query: 610 KLIDSMGSISELAAINSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEKF 664 + +M S++E +A S +VS+ EE A++ ASA +++ MA L+ +++F Sbjct: 303 TSVQNMASVAEESAEQSSSVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQF 357 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 116/223 (52%) Query: 444 AQRGRAQVMDTVQAMNTISSSTQETEEQLQAVSELSDQVSTIIGTIXXXXXXXXXXXXXX 503 A G V TV MN I S +E E+ ++ + S ++ I+ I Sbjct: 438 ASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILRVINGIADQTNLLALNA 497 Query: 504 XXXXXXXGEHGRGFSVVAEEVRKLSDETHKQATEISALVSDMVSRITQAVDSMRGATEAV 563 GE+GRGFSVVAEEVRKL+ ++ A EI L+ ++V I ++ + + V Sbjct: 498 AIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVKEINTSLGMFQSVNQEV 557 Query: 564 EGGVRVVTETDHAFVHIINSVELITGSVKEILDITQDEVATSDQIIKLIDSMGSISELAA 623 + G+ + +T+ +F I I G ++ + Q A+S+++ + + SIS+ ++ Sbjct: 558 QTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSEEVSGASEHIASISKESS 617 Query: 624 INSENVSSATEEQAATVTNFAASAQEVSAMANELEILVEKFII 666 + ++++++ EEQ A++ ++SA+ +S+MA EL + ++F I Sbjct: 618 AHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKI 660 Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 123/279 (44%), Gaps = 29/279 (10%) Query: 94 YISGIQQDHAKLLESLIIAGTDGQVLLTSSPENP---GLDVRDQDYFQQAL--QGKEAVS 148 YIS I +D +ES+ + T G T P+ P G + ++D++++A+ +GK ++ Sbjct: 101 YIS-INKD----VESIYTSDTKGH--FTRYPDLPMPSGYNPVERDWYKKAVANKGKVVIT 153 Query: 149 EVLFSKESNQHVVAIARPLEHDGHITGVLIGTVVFNSLSSPVAEVKIGDSGYGYMTDRTG 208 + + +N VV IA+ + DG +GV+ + +L +V IG GY ++ + Sbjct: 154 DPYKTASTNTMVVTIAQQTK-DG--SGVIAINMTIENLLKTTKKVNIGTQGYAFIMTKDK 210 Query: 209 LIVYHPDQGKILKETLDGNSNKELNA-LVQVMKSGKASDGFYTYEGVHKYMSF--QPAGN 265 +V HP++ S EL + M S D YT +G K M+F Sbjct: 211 KVVAHPNE----------QSGTELKGDWLDKMLSADKGDFQYTMDGDKKKMAFDTNKLTG 260 Query: 266 WVVATTANVQDYMAPATEIRNTTXXXXXXXXXXXXXXXXXXTTRNIVHPIIKLEQAMSRA 325 W + T + D + A + R+I P+ +L + R Sbjct: 261 WKIGGTMYL-DEIHEAAQPVLHLALIVLAAAIIIGIIVMTLIIRSITTPLKQLVGSSKRI 319 Query: 326 GEGNLTVHTSIRSGDELQELSEAFNTMIDKQKAIIEKVR 364 EG+LT IRS DEL EL ++FN M +++I ++ Sbjct: 320 SEGDLTETIDIRSKDELGELGKSFNNMASSLRSLIHAIQ 358 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.310 0.125 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,518,668 Number of extensions: 1166718 Number of successful extensions: 6293 Number of sequences better than 1.0e-05: 781 Number of HSP's gapped: 4429 Number of HSP's successfully gapped: 794 Length of query: 672 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 559 Effective length of database: 25,345,689 Effective search space: 14168240151 Effective search space used: 14168240151 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 119 (50.4 bits)