BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0022.p
         (92 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all4160_1 [T] COG1366 Anti-anti-sigma regulatory factor (antagon...    51   4e-07

>all4160_1 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 3/90 (3%), Positives = 15/90 (16%), Gaps = 2/90 (2%)

Query: 4   IVIDMPEMFSVEEASEFREKIRGHIDGGFSS--FVLDFGGCAFIDSTGLGVIVSSYKKCV 61
             +        ++A      +    +   +           A  +     ++  +     
Sbjct: 29  KKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRH 88

Query: 62  ENGGTIKLKALNANVLKIFELTRLTHVFEI 91
                  +    A +               
Sbjct: 89  RGKIQAIIGNARAYLQMEQNGEPFVDFVWS 118


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,482,119
Number of extensions: 209876
Number of successful extensions: 422
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 30
Effective length of database: 31,227,723
Effective search space: 936831690
Effective search space used: 936831690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)