BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0019.p (1046 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH2013_3 [T] COG2972 Predicted signal transduction protein with ... 210 9e-54 BH1547_3 [T] COG2972 Predicted signal transduction protein with ... 189 2e-47 BS_ywpD_2 [T] COG2972 Predicted signal transduction protein with... 158 6e-38 VC0622_1 [T] COG0642 Signal transduction histidine kinase 155 3e-37 BH1547_2 [T] COG0784 FOG: CheY-like receiver 152 3e-36 >BH2013_3 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 216 Score = 210 bits (535), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 105/211 (49%), Positives = 140/211 (66%) Query: 832 RSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLR 891 R++ LK SI E LRMEAA+LQAQIQPHFLFNTLN+I +LSEIDT +M L E F +LR Sbjct: 1 RAVIELKHSIQERLRMEAAWLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLEKFGQFLR 60 Query: 892 ISFDYMNSHQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPLTLQPLVE 951 SFD N H V ++HEL L +YVYIEQ RF ERL V WD ++ + LPPL++QPLVE Sbjct: 61 KSFDGQNIHSLVPITHELALTESYVYIEQERFGERLKVHWDKDEHVVCNLPPLSIQPLVE 120 Query: 952 NAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKVSGGIGLL 1011 NA++H IRI+ + D+G GM + ++++L GIG+L Sbjct: 121 NALKHGVLKKPEGGNVHIRIKKQEETVKIMITDDGVGMDKATLNNVLTRKPDQVSGIGML 180 Query: 1012 NTNRRLTQLYGRGLSIQSEPEQGTSVSFTIP 1042 NT+ RL QL+G+GL ++S+P +GTS+SF +P Sbjct: 181 NTDLRLKQLFGKGLFVESQPGKGTSISFYVP 211 >BH1547_3 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 218 Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/210 (47%), Positives = 134/210 (63%), Gaps = 1/210 (0%) Query: 832 RSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLR 891 ++LT KQSI + LRME A+LQAQIQPHFLFNTLN+I+ALSEID +M+ L E F+ +L+ Sbjct: 1 KALTEAKQSIRDQLRMEGAWLQAQIQPHFLFNTLNAILALSEIDIKRMQKLLEVFADFLK 60 Query: 892 ISFDYMNSHQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPLTLQPLVE 951 F + N + + EL V++Y+YIE+ RF +RL V W++ED +P T+QPLVE Sbjct: 61 NKFTFTNLDELAPIEIELSTVQSYLYIEKERFAQRLNVRWEVEDCKALMIPLFTIQPLVE 120 Query: 952 NAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKVSGGIGLL 1011 NAV+H TI+I++ + V DNG GM + V HLL GIGL Sbjct: 121 NAVKH-GLNRSSGGEITIKIKNEDTYVKVTVTDNGVGMDENIVQHLLTERPSARSGIGLR 179 Query: 1012 NTNRRLTQLYGRGLSIQSEPEQGTSVSFTI 1041 NT+ RL + YG+GL I+S+ GTSVSF + Sbjct: 180 NTDMRLKRHYGKGLHIESKLGVGTSVSFLV 209 >BS_ywpD_2 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 218 Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 124/202 (61%), Gaps = 5/202 (2%) Query: 842 DEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSHQ 901 ++ RME A+LQ+QI+PHFL+N LN+I++L+ +D K R+++E F++YLR+SFD+ N+ Sbjct: 2 NQATRMEMAFLQSQIKPHFLYNVLNTIISLTHLDIEKAREVTEEFTNYLRMSFDFQNTSA 61 Query: 902 RVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXXX 961 + HEL ++ +Y+ IE+ RF RL V +DI++ I+ LPPL +QPLVENAV H Sbjct: 62 ISSFRHELSIINSYLSIEKTRFSNRLEVLFDIDEDIDFILPPLMIQPLVENAVLHGVSKK 121 Query: 962 XXX--XXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKVSGGIGLLNTNRRLTQ 1019 T + +S + +V DNG G+T E+ LL S +GL N N+RL Sbjct: 122 RGGGWIKLTAKKQSKNEY-HIKVEDNGPGITPEKQIDLL--STDFDRSVGLKNINQRLKH 178 Query: 1020 LYGRGLSIQSEPEQGTSVSFTI 1041 G L I S P+ GTSVS I Sbjct: 179 FCGSELMISSTPDAGTSVSMLI 200 >VC0622_1 [T] COG0642 Signal transduction histidine kinase Length = 769 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 149/257 (57%), Gaps = 3/257 (1%) Query: 430 KLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDLLLTI 489 K N +LQ ++LKD+FLA TSHELRTPLHG+I IA+ + + + + + +D++++ Sbjct: 496 KQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISS 555 Query: 490 SRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNNIADS 549 +R++ L++DLLD +++ +++QR + + S V+++ + + L + N +++ Sbjct: 556 GQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQ 615 Query: 550 LPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEETLSR 609 V AD +RL Q+L+NL+ NA+KYT EG I +SA ++ + V DTG G+ E L Sbjct: 616 PVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEH 675 Query: 610 IFKRY-EXXXXXXXXXXXXXXXXSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLAKGTD 668 IF+ + SI +QL+EL HGTL V SQP G+ F+FTLPLA + Sbjct: 676 IFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEE 735 Query: 669 QPASALSSQEMPKNTEP 685 + L+ E+P P Sbjct: 736 IAQARLT--ELPHFQAP 750 >BH1547_2 [T] COG0784 FOG: CheY-like receiver Length = 114 Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 94/113 (83%) Query: 719 HILAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLLGTEQWDLLIADVMMPHISGYE 778 IL VDD+ VNLKV+ASIL++E Y ++T + EA+ +L T++WDL++ADVMMP +SGYE Sbjct: 2 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKEWDLVVADVMMPKMSGYE 61 Query: 779 LTRIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDGLELKYRV 831 LT+ +R+RF+L+ELPILL+TAR++PEDI GF +GANDYL KPV+ LEL+ R+ Sbjct: 62 LTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARI 114 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 70,983,937 Number of extensions: 2931171 Number of successful extensions: 9227 Number of sequences better than 1.0e-05: 571 Number of HSP's gapped: 8755 Number of HSP's successfully gapped: 571 Length of query: 1046 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 929 Effective length of database: 24,884,353 Effective search space: 23117563937 Effective search space used: 23117563937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)