BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0018.p (147 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria 167 4e-42 CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria 136 9e-33 lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria 129 1e-30 BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria 88 4e-18 PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria 84 5e-17 >CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 77/136 (56%), Positives = 100/136 (73%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 +AI Y NF+GN REAVEFYAEVF T+ P+IM +G+ PP EE K+LV++A L + Sbjct: 1 MAIQAYINFDGNCREAVEFYAEVFETKKPKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 GS +MFSD+ PGM V GNN++L + +D ++K FN+LKE G V+MELQETFWSKCY Sbjct: 61 KGSTIMFSDIVPGMKLVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETFWSKCY 120 Query: 124 GSLKDKFGIIWQLSHD 139 G + DKFGI WQLS++ Sbjct: 121 GYVVDKFGIEWQLSYE 136 >CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 136 bits (343), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 92/134 (68%) Query: 6 INVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFIDG 65 + VY +FNGN R+A+EFY+ VF + + +T+ E P P + ++ + L+ ++ + + G Sbjct: 3 LQVYISFNGNCRKALEFYSRVFEAKINKTVTYKELPSHPKVAIEKDVEELIAYSSIILKG 62 Query: 66 SPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCYGS 125 + + DVFPGMP GNNV+LT+ ++ + +++ FNKLKE GNV MELQ+T+WS+CYGS Sbjct: 63 NYLNMVDVFPGMPLTRGNNVSLTIVSNKSNELEVLFNKLKEDGNVNMELQKTYWSRCYGS 122 Query: 126 LKDKFGIIWQLSHD 139 L DKFGI W + + Sbjct: 123 LTDKFGIEWHFNCE 136 >lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 135 Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 1/133 (0%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 + +NVY NF +R+A+ FY E+FGT+ +MT+GE P+ + K LVM+A L + Sbjct: 1 MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGEIES-AEEPIEDSLKDLVMNASLVL 59 Query: 64 DGSPVMFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCY 123 DG VMFSDV MP G+N+ L + D K+ F++L EGGN+IM L +TFWS+ Y Sbjct: 60 DGVKVMFSDVPKSMPLTFGDNITLVIDTTDEIKLTKQFHQLAEGGNIIMPLGKTFWSEKY 119 Query: 124 GSLKDKFGIIWQL 136 G + DKFGI WQL Sbjct: 120 GQVTDKFGIGWQL 132 >BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 148 Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 4 VAINVYFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFI 63 + +N Y +G+ + A+EFY + E I T+G+ P P+ P+ K L++HA L + Sbjct: 3 LTMNPYLMLDGDGQAAIEFYQDALNAEVITIQTYGDLPEQPNSPMASVNKDLILHAHLKL 62 Query: 64 DGSPVMFSD----VFP-GMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETF 118 +M SD V P P G+ V + LT ++ + F KL GG I L++TF Sbjct: 63 GEMDLMISDQCLDVDPERFPQHSGSPVTIALTTNNVEMTTEVFQKLASGGEEIAPLEKTF 122 Query: 119 WSKCYGSLKDKFGIIWQLS 137 +S YG + DKFGI W +S Sbjct: 123 FSPLYGQVTDKFGITWHVS 141 >PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 9 YFNFNGNAREAVEFYAEVFGTEAPRIMTFGEAPPDPSHPLPEEAKHLVMHAMLFIDGSPV 68 Y FNGN REA Y + G ++ FG++P +P + K +MHA L + + Sbjct: 6 YLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPE--CGDIPADWKDKIMHARLVVGSFAL 63 Query: 69 MFSDVFPGMPYVEGNNVNLTLTNDDAGKIKDWFNKLKEGGNVIMELQETFWSKCYGSLKD 128 M SD P PY +++L D + + FN L EGG+V M L TFW+ +G D Sbjct: 64 MASDNHPAYPYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASFGMFTD 123 Query: 129 KFGIIWQLSHDNGQ 142 +FG+ W ++ + + Sbjct: 124 RFGVAWMVNCEQDR 137 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,588,003 Number of extensions: 510929 Number of successful extensions: 1101 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 1090 Number of HSP's successfully gapped: 14 Length of query: 147 Length of database: 38,378,431 Length adjustment: 96 Effective length of query: 51 Effective length of database: 27,306,367 Effective search space: 1392624717 Effective search space used: 1392624717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)