BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0016.p (531 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot... 84 8e-16 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 77 5e-14 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 75 3e-13 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 73 1e-12 BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing prot... 73 1e-12 >SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 333 Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 40/100 (40%), Positives = 62/100 (62%) Query: 426 ISRIIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLL 485 + R + H+ E L+ P+ L +LA ++ S +FS +FKKA G S +Y R R+ +A+LLL Sbjct: 234 LRRAVAHLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLL 293 Query: 486 LTTDHKTFEISESIGFENYRSFNRIFKKETGVSPSDYRRN 525 TD EI S+G+ + F ++F++ETG+ PS YRR Sbjct: 294 QETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRRG 333 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 1/102 (0%) Query: 423 DSSISRIIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAK 482 D + ++I + +D + +LE LA+ NY+ Y +FK GE F YL ++RIE K Sbjct: 396 DLLLRKMIALIHKDYAKNLRLETLASVFNYNRAYLGKLFKNYTGEYFNTYLDKVRIENGK 455 Query: 483 LLLLTTDHKTFEISESIGFENYRSFNRIFKKETGVSPSDYRR 524 LL +K +E++E IG+ N F+R FKK GVSPS +R+ Sbjct: 456 -RLLQKGYKVYEVAEKIGYANVDYFHRKFKKYVGVSPSTFRK 496 Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 79/145 (54%), Gaps = 19/145 (13%) Query: 1 VEDEIPARTVFRHFI--EERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGL 58 V+DE R + I EE G F ++ A +G++G + + P+L++ DI MP ++GL Sbjct: 7 VDDEAMVREGLKALISWEEYG--FRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPEVDGL 64 Query: 59 EMLREIEKSGERPPQIIILTCHQDFHYAQQAIHLKAASYLIK---DDCLSDP-----GLL 110 ++ I ++ + IIL+ H DF+YA++A+ + YL+K +D L D G + Sbjct: 65 SLIESI-RAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKPLDEDELIDSLKKVYGRI 123 Query: 111 TRTMEQLASQVHS-IDETREKQLQL 134 TR QVH ++ +EKQ+++ Sbjct: 124 TR-----HHQVHELVERVQEKQVEM 143 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 13/137 (9%) Query: 398 FGSVHDTT----CAYFHKLQQLQEGGKKIDSSI-----SRIIQHMREDLSYPYKLEELAA 448 F +VH T H ++ LQE + S+ + H RE P L++LA Sbjct: 384 FSTVHQVTEHGKSEILHIVRTLQEWRTTDEQSLMLLARDYVHDHFRE----PLTLDDLAK 439 Query: 449 SMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLLLTTDHKTFEISESIGFENYRSFN 508 + S Y S +FK+ +F +Y+T+LR+E AK LL T EI+ IG+++ F+ Sbjct: 440 HIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFS 499 Query: 509 RIFKKETGVSPSDYRRN 525 R+FKK TG SPSDYR++ Sbjct: 500 RVFKKLTGKSPSDYRKS 516 Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 91/164 (55%), Gaps = 5/164 (3%) Query: 1 VEDEIPARTVFRHFIEERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEM 60 V+DE R + F+++R ++ +VGEA +G+ +E L+ +P+L++ DI MPG++G++ Sbjct: 7 VDDEQIEREGLKLFLKDRPNIH-IVGEASNGRQAIEKALETQPDLMMMDIKMPGVDGVQA 65 Query: 61 LREIEKSGERPPQIIILTCHQDFHYAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLASQ 120 ++EI K + I+++ F YA++ + YL+K D +LT ++++ + Sbjct: 66 VKEI-KQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKED--VLT-ALDRIVGE 121 Query: 121 VHSIDETREKQLQLEQQVRLSEVEIEQSLFLDMLLNPAAEAKWL 164 + E + Q +L+Q++ ++ L +L++ + +W+ Sbjct: 122 IEQAREEKNDQYKLQQRLEQISSFVQTESILYLLMDHIQDYEWM 165 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 4/100 (4%) Query: 422 IDSSISRIIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKA 481 I+ + I +H+ E+++ L+++A + S Y +FKK VGESF Y+TRLR+EKA Sbjct: 426 IEQVMIYIEKHLAENIT----LQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKA 481 Query: 482 KLLLLTTDHKTFEISESIGFENYRSFNRIFKKETGVSPSD 521 K ++ + +E+SE +G+ N F +FKK TG +P D Sbjct: 482 KKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGYTPRD 521 Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 18/143 (12%) Query: 25 VGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEMLREIEKSGERPPQIIILTCHQDFH 84 VGEA +G+ GL++ + P +++TDI MP M GL+M++ + + G +++IL+ + +F Sbjct: 31 VGEAANGRRGLDIVRETSPHIVLTDIYMPIMYGLDMIQILREDG-FDGEVVILSGYSEFE 89 Query: 85 YAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLASQVHSIDETREKQLQLEQQVRLSEVE 144 +A++A+ L Y LS P + T+E + +V I++ EKQ QQ L E+ Sbjct: 90 HARKAMQLNITDY------LSKPASVD-TIETVLKRV--INKLEEKQ---RQQGYLQELT 137 Query: 145 IEQSLFLDMLLNPAAEAKWLRTL 167 + + P E +W+++L Sbjct: 138 NKVKRY-----EPLVETEWMKSL 155 >BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 761 Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 3/98 (3%) Query: 428 RIIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLLLT 487 R+I + E LE A ++ + S FK+ G +F+ Y+T++RIEKAK LL+ Sbjct: 660 RVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVN 719 Query: 488 TDHKTFEISESIGF-ENYRSFNRIFKKETGVSPSDYRR 524 T+ K ++SE +G+ NY FNRIFKK+ G+ P +R+ Sbjct: 720 TNKKIHDVSEEVGYRHNY--FNRIFKKQVGMPPGVFRQ 755 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 36,815,607 Number of extensions: 1527237 Number of successful extensions: 5860 Number of sequences better than 1.0e-05: 899 Number of HSP's gapped: 5941 Number of HSP's successfully gapped: 910 Length of query: 531 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 420 Effective length of database: 25,576,357 Effective search space: 10742069940 Effective search space used: 10742069940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 118 (50.1 bits)