BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0012.p (290 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 269 3e-72 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 259 4e-69 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 202 7e-52 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 199 6e-51 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 191 2e-48 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/278 (47%), Positives = 185/278 (66%), Gaps = 1/278 (0%) Query: 14 YFVIFHYIPMSGLVLAFKEYSPFKGIINSPWVGLDNFRQFFGTSDFYXXXXXXXXXXXXX 73 YF+IF Y+PM G+++AFK+YSP+ G S WVG D F+ FF DF+ Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 74 XVIYFPFTIIXXXXXXXXXXKVFKRVSQTIVYLPHFLSWVVIYGITISFFG-PSGVINHY 132 + FP +I V+KR QT +Y+PHF+SW ++ IT FF +GVIN Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 133 LTEWFGGSANFLVSNEWFRPLVIFQSIWKDAGWGTIIFLAALAGINPEQYEAAKVDGANR 192 + G +FL +WFRP+++ QSIWK+ GWGTI+FLAALA ++ EQYEAA +DGA R Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 193 FQNIWHITLPGIKSTIVILLLLRLGSSMDSNFMQIFLMTNSLNLDVSNVFDLFVYHIGLE 252 F+ +WHITLP I+STI++LL+LR+GS ++ F Q++LMTNSLN V+++FD +VY +G+ Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGIT 280 Query: 253 QFNYSFAITVGMFKSVASLILVLGANYAAKLLGEEGIF 290 Q YS++ VG+FKSV +IL+ GANY AK +EG+F Sbjct: 281 QGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 130/287 (45%), Positives = 189/287 (65%), Gaps = 1/287 (0%) Query: 5 YLLAAPGMLYFVIFHYIPMSGLVLAFKEYSPFKGIINSPWVGLDNFRQFFGTSDFYXXXX 64 YL+ PG++YF+IF Y+PM GL++AF++Y PF G+ S WVG +F + F F+ Sbjct: 39 YLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLR 98 Query: 65 XXXXXXXXXXVIYFPFTIIXXXXXXXXXXKVFKRVSQTIVYLPHFLSWVVIYGIT-ISFF 123 + +FP II VFKR QT++Y+PHF+SWV++ +T + F Sbjct: 99 NTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFT 158 Query: 124 GPSGVINHYLTEWFGGSANFLVSNEWFRPLVIFQSIWKDAGWGTIIFLAALAGINPEQYE 183 GVIN + G + NFL+S +WFRPL I Q IW++AGW TII+ AA+A I+P YE Sbjct: 159 TDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYE 218 Query: 184 AAKVDGANRFQNIWHITLPGIKSTIVILLLLRLGSSMDSNFMQIFLMTNSLNLDVSNVFD 243 AAK+DGANRF+ IWHITLP I+S IV+LL+L++G ++ F +FLM N++N +V+ +FD Sbjct: 219 AAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFD 278 Query: 244 LFVYHIGLEQFNYSFAITVGMFKSVASLILVLGANYAAKLLGEEGIF 290 +VY GL++ +S++ VG FKS+ LI+V+ AN+ AK GEEG++ Sbjct: 279 TYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 108/278 (38%), Positives = 156/278 (56%), Gaps = 3/278 (1%) Query: 4 FYLLAAPGMLYFVIFHYIPMSGLVLAFKEYSPFKGIINSPWVGLDNFRQFFGTSDFYXXX 63 YL++ P + + ++F+Y P+ G +AF+ + P WVGL +F + F + FY Sbjct: 30 LYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVL 89 Query: 64 XXXXXXXXXXXVIYFPFTIIXXXXXXXXXXKVFKRVSQTIVYLPHFLSWVVIYGITISFF 123 ++ F I+ VFKR QT+ YLPHF+SWVV+ GI Sbjct: 90 RNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKML 149 Query: 124 GPSGVINHYLTEWFG---GSANFLVSNEWFRPLVIFQSIWKDAGWGTIIFLAALAGINPE 180 G I + L FG F+ EWF +V +WK+ GW +IIFLAA+AGI+P+ Sbjct: 150 SIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQ 209 Query: 181 QYEAAKVDGANRFQNIWHITLPGIKSTIVILLLLRLGSSMDSNFMQIFLMTNSLNLDVSN 240 YEAAKVDGA+R++ IWHITLPGI+ TI+++L+L +G M F + FL+ N L +D S Sbjct: 210 LYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVVDYSE 269 Query: 241 VFDLFVYHIGLEQFNYSFAITVGMFKSVASLILVLGAN 278 V DL+ + GL YS+ +G+F SV +IL+ AN Sbjct: 270 VLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLAN 307 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 108/286 (37%), Positives = 166/286 (58%), Gaps = 4/286 (1%) Query: 6 LLAAPGMLYFVIFHYIPMSGLVLAFKEYSPFKGIINSPWVGLDNFRQFFGTSDFYXXXXX 65 L+ PG++ IF YIPM G+++AFK+Y+P KGI+ S W+G F +F + +F Sbjct: 22 LMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPNFGILLAN 81 Query: 66 XXXXXXXXXVI-YFPFTIIXXXXXXXXXXKVFKRVSQTIVYLPHFLSWVVIYGITISFFG 124 ++ + P I+ KV KR+ Q I+Y P+F+S VVI G+ FF Sbjct: 82 TLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRI-QLILYAPNFISVVVIVGMIFLFFS 140 Query: 125 PSGVINHYLTEWFGGSANFLVSNEWFRPLVIFQSIWKDAGWGTIIFLAALAGINPEQYEA 184 G IN++L+ FG A+FL + ++FRPL IF IW+ GW + ++ A L ++P EA Sbjct: 141 VGGPINNFLS-MFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVDPALVEA 199 Query: 185 AKVDGANRFQNIWHITLPGIKSTIVILLLLRLGSSMDSNFMQIFLMTNSLNLDVSNVFDL 244 A++DGAN FQ IWHI +P +K +VI +L G M+ + + FLM SLNL S + Sbjct: 200 ARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPTSEIIST 259 Query: 245 FVYHIGLEQFNYSFAITVGMFKSVASLILVLGANYAAKLLGE-EGI 289 +VY +GL +YS++ VG+F +V +++L++ N K + EGI Sbjct: 260 YVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 160/288 (55%), Gaps = 3/288 (1%) Query: 6 LLAAPGMLYFVIFHYIPMSGLVLAFKEYSPFKGIINSPWVGLDNFRQFFGTSDFYXXXXX 65 L++ P +++ +IF Y+P+ G +AF+++ P + I + W G +F F F+ Sbjct: 50 LMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRN 109 Query: 66 XXXXXXXXXVIYFPFTIIXXXXXXXXXXKVFKRVSQTIVYLPHFLSWVVIYGITISFFG- 124 V+ F I FKRV QTI Y+PHFLSWVV G+ + Sbjct: 110 TLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSI 169 Query: 125 PSGVINHYLTE--WFGGSANFLVSNEWFRPLVIFQSIWKDAGWGTIIFLAALAGINPEQY 182 +G+IN L + +L E+F ++ +WK+ GW TII+LAA+ I+ EQY Sbjct: 170 ENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQY 229 Query: 183 EAAKVDGANRFQNIWHITLPGIKSTIVILLLLRLGSSMDSNFMQIFLMTNSLNLDVSNVF 242 EAA++DGA R Q IW+ITLPG++ IVILL++ LG ++S F +L+ N +N+D + Sbjct: 230 EAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENL 289 Query: 243 DLFVYHIGLEQFNYSFAITVGMFKSVASLILVLGANYAAKLLGEEGIF 290 D+FV G+ N+S A G+FK+V S I + AN+ AK LGE +F Sbjct: 290 DIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.145 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,637,855 Number of extensions: 740184 Number of successful extensions: 2219 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 2155 Number of HSP's successfully gapped: 119 Length of query: 290 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 185 Effective length of database: 26,268,361 Effective search space: 4859646785 Effective search space used: 4859646785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)