BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0011.p (289 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 252 5e-67 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 244 9e-65 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 239 4e-63 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 191 1e-48 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 180 2e-45 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 127/273 (46%), Positives = 182/273 (66%), Gaps = 22/273 (8%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PFLYIIA SF+ + +FFI+PK +TLDAY Y+ + TFL S+ S+ ITV+GT + Sbjct: 34 PFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQ 93 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 LF + T+AY L+K+ + GR GGMIP+YLVVK+LGL+D+YWA++LP A Sbjct: 94 LFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMA 153 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 + FN+++I++FFQ LP L+E+A+IDG E + + I LPLSKP+IATF LF+ V WN Sbjct: 154 INPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWN 213 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQN-------- 257 +FF A++Y+ND+++WP+Q +LRQ+ + + L A G +QN Sbjct: 214 DFFHALLYINDSAKWPLQMVLRQVT------------ILSDLTATNGDTMQNAVPPEQGI 261 Query: 258 --AAILLAMLPIVIVYPFLQKYFAKGAMLGSIK 288 A I++A LPI+ VYPFLQK+FAKG ++GS+K Sbjct: 262 KLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 244 bits (624), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 116/263 (44%), Positives = 179/263 (68%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PF++I+A SF+ + L F ++P ++LDAY Y+ + D S+ S+++TV+GT S Sbjct: 30 PFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFS 89 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 +F++ +AY LS+K L GRR GGMIP++LVV++LGL+D+YWA+++P A Sbjct: 90 MFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTA 149 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 +AFN++++++FFQ++PESL+E+A+IDG + I + IV PLS P IAT +LF+ V +WN Sbjct: 150 INAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWN 209 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQNAAILLAML 265 F A++YLND+S WPIQ LLRQ+V + A ++ A I++A + Sbjct: 210 TFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATI 269 Query: 266 PIVIVYPFLQKYFAKGAMLGSIK 288 P++IVYPF+QK+FAKGA+LGS+K Sbjct: 270 PVLIVYPFIQKHFAKGALLGSVK 292 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/266 (43%), Positives = 184/266 (69%), Gaps = 7/266 (2%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PF+++IA SF+ + ++ F + P ++LDAY Y+ + D S+ SV +TV+GT +S Sbjct: 24 PFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVS 83 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 +F+S +AY LS++ L GR+ GGMIP++LVVK+LGL+DSYWA++LP A Sbjct: 84 MFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTA 143 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 +AFN++++++FFQ++P SL+E+A+IDG + I + IVLPLS P IAT +LF+ V +WN Sbjct: 144 INAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWN 203 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGP---NVQNAAILL 262 + +A++YLND+++WPIQ LLRQ+V +++ + P ++ A I++ Sbjct: 204 TYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDM----SEMGSGSPPPEQTIKMAVIVV 259 Query: 263 AMLPIVIVYPFLQKYFAKGAMLGSIK 288 A +P+++VYPF+QK+FAKGA+LGS+K Sbjct: 260 ATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/268 (41%), Positives = 161/268 (60%), Gaps = 8/268 (2%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 P ++I AVS S G + A P +TLDAY + D F+ S SVV V+GT++S Sbjct: 30 PLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVLGTVIS 89 Query: 86 LFVSITLAYALSK--KFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLP 143 + + AYALSK + GR+ +GG++P+Y+VV LGL ++ WA+VLP Sbjct: 90 MGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLP 149 Query: 144 AASSAFNIMVIRSFFQS-LPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQ 202 A +AFN++++ +FF++ +P+SL+E+A IDGA F+I I LP+S P IAT +LF MV Sbjct: 150 PAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFTMVF 209 Query: 203 FWNEFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGP-NVQNAAIL 261 WN +F +IY ND +P+Q L+ +V DA+ NL VQ A I Sbjct: 210 HWNSWFDGMIYNNDARNYPLQTFLQTIV----VQQDFSQITDAETLRNLSQRTVQAAQIF 265 Query: 262 LAMLPIVIVYPFLQKYFAKGAMLGSIKE 289 +A LP++IVYPF+QKYF KG +LG+ KE Sbjct: 266 IAALPMLIVYPFIQKYFVKGIVLGAEKE 293 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/272 (38%), Positives = 165/272 (60%), Gaps = 10/272 (3%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYL--LNADTFLTSVRNSVVITVMGTL 83 PF+Y+I +S + + I P W+ DAY YL + ++ F + ++ ITV+GTL Sbjct: 53 PFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVF-RAYGVTIFITVVGTL 111 Query: 84 LSLFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKN-LGLIDSYWAVVL 142 +S+ + AYA+S+K R+ GGM+P Y+V+ LGL +S WA++L Sbjct: 112 MSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWALIL 171 Query: 143 PAASSAFNIMVIRSFFQ-SLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMV 201 P A +AF I+++R+FFQ S+PE++ E+ARIDGAGEFRI + IVLPLS P IAT LF + Sbjct: 172 PMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALFSTL 231 Query: 202 QFWNEFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQNAA-- 259 +WN++F+A+++++D P+Q LL + + + +Q +A L Q++A Sbjct: 232 AYWNDWFNALLFIDDPKLVPLQSLLMR-IENNLDFIRQNAMLSSQNSALLDSIPQDSARM 290 Query: 260 --ILLAMLPIVIVYPFLQKYFAKGAMLGSIKE 289 +++A LPI + YPF QKYF KG +G +KE Sbjct: 291 AMVVIATLPIALSYPFFQKYFVKGLTIGGVKE 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,888,722 Number of extensions: 568220 Number of successful extensions: 2209 Number of sequences better than 1.0e-05: 150 Number of HSP's gapped: 2002 Number of HSP's successfully gapped: 150 Length of query: 289 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 184 Effective length of database: 26,268,361 Effective search space: 4833378424 Effective search space used: 4833378424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)