BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0005.p
         (93 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3702 [T] COG3706 Response regulator containing a CheY-like rec...    55   2e-08
ycdT_2 [T] COG2199 FOG: GGDEF domain                                   52   2e-07
ECs1271_2 [T] COG2199 FOG: GGDEF domain                                51   4e-07
mll2297_2 [T] COG2199 FOG: GGDEF domain                                51   5e-07
mll3440_3 [T] COG2199 FOG: GGDEF domain                                50   1e-06

>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain
          Length = 347

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVRE- 67
           GEEF +V+ G +P  +R  AE +RR++  L+I H        +TVSIGV+ +      + 
Sbjct: 252 GEEFAMVLPGTSPGGARLLAEKVRRTVESLQISHDQPRPGSHLTVSIGVSTLVPGGGGQT 311

Query: 68  -EDIYKLGDDALYQSKAQGRNCVTMFQ 93
              + ++ D ALYQ+K  GRN V + +
Sbjct: 312 FRVLIEMADQALYQAKNNGRNQVGLME 338


>ycdT_2 [T] COG2199 FOG: GGDEF domain
          Length = 202

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGI---ITVSIGVAAVYVDNV 65
           GEEFG++++     +++  AE IR ++  L  ++    +Y I   +T+SIG      + +
Sbjct: 110 GEEFGVLLTDIDTERAKALAERIRENVERLTGDNP---EYAIPQKVTISIGAVVTQENAL 166

Query: 66  REEDIYKLGDDALYQSKAQGRNCVTM 91
              +IY+L D+ALY++K  GRN V +
Sbjct: 167 NPNEIYRLADNALYEAKETGRNKVVV 192


>ECs1271_2 [T] COG2199 FOG: GGDEF domain
          Length = 202

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 6/86 (6%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGI---ITVSIGVAAVYVDNV 65
           GEEFG++++     +++  AE IR ++  L  ++    +Y I   +T+SIG      + +
Sbjct: 110 GEEFGVLLTDIDTERAKALAERIRENVERLTGDNP---EYAIPQKVTISIGAVVTQGNAL 166

Query: 66  REEDIYKLGDDALYQSKAQGRNCVTM 91
              +IY+L D+ALY++K  GRN V +
Sbjct: 167 NPNEIYRLADNALYEAKETGRNKVVV 192


>mll2297_2 [T] COG2199 FOG: GGDEF domain
          Length = 179

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTD-YGIITVSIGVAAVYVD-NVR 66
           GEEF ++       Q  E AE+I R++ +L I H L  D   I+T S+G A        +
Sbjct: 93  GEEFIVLARMDKKDQVAELAEAICRTVENLAITHELRRDGISIVTASVGAAFTRTQAGAK 152

Query: 67  EEDIYKLGDDALYQSKAQGRNCVTMF 92
            E I    D ALY +KA GRNC  +F
Sbjct: 153 LEKIIHEADRALYLAKAGGRNCARLF 178


>mll3440_3 [T] COG2199 FOG: GGDEF domain
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEEF +++ G +   + E AE++R++I  L + H   T  G IT S GV+A         
Sbjct: 92  GEEFALMMPGTSLADAAERAEALRKAIKQLHLTHRGRT-LGTITASFGVSAFPELGASWV 150

Query: 69  DIYKLGDDALYQSKAQGRNCV 89
           +I    D +LYQ+KA GR+ V
Sbjct: 151 EIVNAADRSLYQAKADGRDRV 171


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,189,269
Number of extensions: 205757
Number of successful extensions: 749
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 10
Length of query: 93
Length of database: 38,378,431
Length adjustment: 62
Effective length of query: 31
Effective length of database: 31,227,723
Effective search space: 968059413
Effective search space used: 968059413
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)