BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0038.p
         (429 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1641 [GEPR] COG0477 Permeases of the major facilitator superf...    60   7e-09

>SMa1641 [GEPR] COG0477 Permeases of the major facilitator superfamily
          Length = 440

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 74/127 (58%), Gaps = 7/127 (5%)

Query: 12  EVLKRRSKGYSRLFAAGLVNGIGDRFSSVAM--LALILQVTGSGMAVGISLGMRVLPFLF 69
           +VL  R+  Y RLF A ++  +G   ++VA+  LA  L    +G  +G +L ++++ ++ 
Sbjct: 3   QVLANRT--YRRLFLAQVIALVGTGLATVALGLLAFDLAGADAGAVLGTALAIKMIAYVG 60

Query: 70  MAPLGGMLAGRLPRKTIMMAVDLLRVPVALSFLLVDGAGRLWLLYAGSFIMAAGEALYSP 129
           +AP+    A +LPR+++++ +DL+R  VA+    V     +W +Y   F++ +  A ++P
Sbjct: 61  VAPVAAAFAEQLPRRSMLVCLDLVRAAVAVFLPFVT---EVWQVYVLIFVLQSASAAFTP 117

Query: 130 VRKSSIP 136
             +++IP
Sbjct: 118 TFQATIP 124


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 25,105,668
Number of extensions: 918987
Number of successful extensions: 3317
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3323
Number of HSP's successfully gapped: 11
Length of query: 429
Length of database: 38,378,431
Length adjustment: 109
Effective length of query: 320
Effective length of database: 25,807,025
Effective search space: 8258248000
Effective search space used: 8258248000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 117 (49.7 bits)