BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0037.p (312 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0464 [K] COG2378 Predicted transcriptional regulator 193 3e-49 lin0395 [K] COG2378 Predicted transcriptional regulator 149 5e-36 lin2535 [K] COG2378 Predicted transcriptional regulator 123 3e-28 BH0411 [K] COG2378 Predicted transcriptional regulator 100 3e-21 mlr3764 [K] COG2378 Predicted transcriptional regulator 89 1e-17 >lin0464 [K] COG2378 Predicted transcriptional regulator Length = 310 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 162/289 (56%), Gaps = 13/289 (4%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K+DRL+SIV++L+++ + A+ELAD FEVS+RTIYRDID+I+ AG+P+ + G GG Sbjct: 1 MKVDRLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFE 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGEHNL-LMEKITSVIPPSKSHAFRSKTT 119 +M Y++D V + +L+ I L S+S+ G+ + + KI S IP ++ K Sbjct: 61 IMPDYKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKAN 120 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 Q+ +D S W ++ + ++K AL E+ + F+Y+ G + RIVEPY LV K + W Sbjct: 121 QIYIDLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHW 180 Query: 180 YLYGFCIQRQDFRLFKLLRMKSL-----VKEARSFERLDIPLQDLPWTEGWKEPLNTQTV 234 YLYG+C R DFRLF+L RM L R F++ + ++D+ + + Sbjct: 181 YLYGYCQNRNDFRLFRLSRMSGLQILEDTFTLRDFQKPQLEMEDIVAIMQIEIKIR---- 236 Query: 235 VLHFSAEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFG 283 +H S R L DY E DG YIV + EN + Y LLSFG Sbjct: 237 -IHQSIIDRVL--DYCSYENFYPDGEEHYIVSFPFIENEYHYDILLSFG 282 >lin0395 [K] COG2378 Predicted transcriptional regulator Length = 306 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/310 (29%), Positives = 151/310 (48%), Gaps = 6/310 (1%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +KI+RL+ I++LL+ R LV A E+A MFEVS RTI+RDID+++ A IP+ T G GGIG Sbjct: 1 MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLSMANIPIYTIAGTKGGIG 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSS-YGAGEHNLLMEKITSVIPPSKSHAFRSKTT 119 +M Y++D+ +LT +L I +L + + E ++K+ +++ H+ + Sbjct: 61 IMPTYKVDKKLLTADDLTAIIASLDGMEQLLSSAETKKTLQKMKNML----EHSSEPPKS 116 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 + +DFS ++ L ++ L A+ + V Y++ G + R EPY L+ + W Sbjct: 117 SISLDFSNLSMKKELNAKVESLYLAIKKHQLVELSYIDRTGNQTVRKTEPYHLLFRNRSW 176 Query: 180 YLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFS 239 YL G+ ++R DFR FK+ R+ L +FE ++ T G + V L Sbjct: 177 YLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFVVKPFSMT-GDRPTFLMHEVTLIVD 235 Query: 240 AEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGTXXXXXXXXXXXXXXA 299 R + FD + ++V++ ++ Y FLL GT Sbjct: 236 KIAREQIVERFDPVAISQHDEEHFLVKVTLPDHEAGYRFLLQLGTHVTIQNRDDFYDSFV 295 Query: 300 GLAAEIAAKY 309 AEI KY Sbjct: 296 DYLAEIQGKY 305 >lin2535 [K] COG2378 Predicted transcriptional regulator Length = 298 Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 149/289 (51%), Gaps = 23/289 (7%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K++R+L+I+++++ R ++ A ELA+ FEVS RTIYRD+D++ AG PVV G NGG Sbjct: 1 MKLERILAILVMILERKVL-ASELAEKFEVSTRTIYRDMDTLLYAGFPVVALPGKNGGFT 59 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGE-HNLLMEKIT--SVIPPSKSHAFRSK 117 +++ Y+L +E E + AL++ S + + L EKIT P+ ++ F Sbjct: 60 MLDTYKLATFTFSEEEKRILLEALEARSEFMLNDSQETLREKITLLQTEKPTSNYIFFDS 119 Query: 118 TTQLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGA 177 TQ ++ ++ +++ +++A + Y+ DG ++R + P L Sbjct: 120 ATQ-----HRKQIEAEVKRKIAYIQKAFTMKKQLDITYIAMDGTETNREISPQKLNLMDG 174 Query: 178 GWYLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLH 237 WYL +C +R R FKL R+ SL + +++ +++ E K+ T+ +VL Sbjct: 175 SWYLEAYCHKRAAIRHFKLTRITSLKETSKTSMKIE---------EDQKQAEVTEKIVLE 225 Query: 238 FSAE--GRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGT 284 F G+ L DYF EE++ + + VR Y + FLL FG+ Sbjct: 226 FPKNQLGKLL--DYFLLEEMQMELDLVR-VRFQYDPERNIIPFLLMFGS 271 >BH0411 [K] COG2378 Predicted transcriptional regulator Length = 331 Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 10/212 (4%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K DRLL IV LL N + +L D VS RTI RD+D+++ GIP+V+ +G GG Sbjct: 1 MKADRLLEIVALLQNHEKLTTHQLVDHLHVSSRTILRDMDTLSALGIPIVSERGRAGGWK 60 Query: 61 LMEGYRLDRNVLTERELADIF-----TALQSVSSYGAGEHNLLMEKITSVIPPSKSHAFR 115 LM+ +R + ++ EL +F L+ + G L + S + ++ HA R Sbjct: 61 LMDHFRSQLSGMSMTELKALFILPSDKVLKDLGIPTKGRDIRL--NMLSSLQGNRKHAVR 118 Query: 116 SKTTQLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHK 175 ++ +D W E +++++A+ E + Y NA G+ R++ P LV K Sbjct: 119 PYLEKVYIDTGTWKPSKERMEEFNVVQQAVFEEKKLYIVYENAKGEQRERLISPLGLVAK 178 Query: 176 GAGWYLYGFCIQRQDFRLFKLLRMK--SLVKE 205 G+ WY+ ++ D R FKL R+K LV+E Sbjct: 179 GSAWYVVA-TVETGDIRNFKLSRIKDSKLVRE 209 >mlr3764 [K] COG2378 Predicted transcriptional regulator Length = 239 Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 14/215 (6%) Query: 2 KIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIGL 61 + DRL IV L LV A++L EVS RTIYRDI + G+P+ G+G Sbjct: 3 RADRLFQIVQHLRGGRLVTAQKLGTWLEVSERTIYRDIADLQSTGVPI----DGEAGVGY 58 Query: 62 M--EGYRLDRNVLTERELADIFTALQSVSSYGAGEHNLL----MEKITSVIPPSKSHAFR 115 M EG+ L + T E+ + + V ++G + KI +V+P ++ + Sbjct: 59 MMREGFDLPPLMFTRDEIVALVAGARMVRAFGGAAMARAADEALVKIGAVLPDTE----K 114 Query: 116 SKTTQLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHK 175 + + + W + E + L++ A+++ + DY + G+ + R + P L Sbjct: 115 DRIARTEIHTPMWVVSDAAREAIDLIERAVEKRQVLTIDYCDEAGRGTARDIRPLGLWFW 174 Query: 176 GAGWYLYGFCIQRQDFRLFKLLRMKSLVKEARSFE 210 G W L +C R DFR F++ R+ S+V R F+ Sbjct: 175 GKVWTLVAWCEMRDDFRAFRIDRIASVVIAGRIFK 209 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,596,099 Number of extensions: 890981 Number of successful extensions: 2124 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 2115 Number of HSP's successfully gapped: 15 Length of query: 312 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 206 Effective length of database: 26,153,027 Effective search space: 5387523562 Effective search space used: 5387523562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)