BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0035.p
         (151 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TVN1246 [K] COG1846 Transcriptional regulators                         65   4e-11
Ta1166 [K] COG1846 Transcriptional regulators                          58   4e-09
NMA1122 [R] COG0596 Predicted hydrolases or acyltransferases (al...    55   3e-08
MA1122 [K] COG1846 Transcriptional regulators                          55   3e-08
CC0396 [K] COG1846 Transcriptional regulators                          54   7e-08

>TVN1246 [K] COG1846 Transcriptional regulators
          Length = 154

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 56/84 (66%)

Query: 29  KDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLGNSAASGVVDRMVKAGLITRQRSE 88
           ++  K++++ T+  ++R L  +  + +  +A L+++     +GVVD+M +  L+TR R  
Sbjct: 34  RNLNKIDLSITEFTIMRHLIENGPMSMAAIASLINVTPGWITGVVDKMEEKNLVTRNRDS 93

Query: 89  SDRRIFKLAMTDKGREIREQSKQS 112
           +DRRI K+A+TD+GRE+ E +K++
Sbjct: 94  TDRRIIKIAITDRGREVYENAKKN 117


>Ta1166 [K] COG1846 Transcriptional regulators
          Length = 150

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 22  NFQQLMWKDAEK----LNITSTQLMVLRKLEAHPDVGITELADLLHLGNSAASGVVDRMV 77
           +  +L +K  E+    +N++ T+  ++R+L  +  + +  +A  +++     +GV+D+M 
Sbjct: 22  DLWKLWYKKTERNLNTINLSVTEFTIMRQLSDNGPMSMAAIASAINVTPGWVTGVIDKME 81

Query: 78  KAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLE 118
             GL+ R+R E+DRRI K+++T+ G+   E++K+   + +E
Sbjct: 82  DKGLVMRKREETDRRIIKISLTEHGKVTYEEAKEKHFAFIE 122


>NMA1122 [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily)
          Length = 157

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 17/143 (11%)

Query: 16  FRCIIHNFQ---QLMWKDAEKLNITSTQ---LMVLRKLEAHPDVGITE--LADLLHLGNS 67
           F  I+H ++   + M K+ E   I S Q   LMVL     H D GI++  LA +L +  +
Sbjct: 14  FGPIVHIYRTHLEYMAKELEVYRIGSGQYDFLMVL----YHKD-GISQENLARMLKVSKA 68

Query: 68  AASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLV-NIPPE 126
            ++  +  + K G + R++ E+D R +K+ +TDKG+E+R    + L S ++ L  +  PE
Sbjct: 69  TSTRAIQNLEKEGYVYREKDENDLRAYKVYLTDKGKEMRGVIFEKLVSFIDVLFSDFTPE 128

Query: 127 DARELLRL--HREIITILEQGRE 147
           + +E+ RL  H+  +   E G E
Sbjct: 129 E-KEIFRLLAHKAALKFFEPGFE 150


>MA1122 [K] COG1846 Transcriptional regulators
          Length = 157

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 17/143 (11%)

Query: 16  FRCIIHNFQ---QLMWKDAEKLNITSTQ---LMVLRKLEAHPDVGITE--LADLLHLGNS 67
           F  I+H ++   + M K+ E   I S Q   LMVL     H D GI++  LA +L +  +
Sbjct: 14  FGPIVHIYRTHLEYMAKELEVYRIGSGQYDFLMVL----YHKD-GISQENLARMLKVSKA 68

Query: 68  AASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLV-NIPPE 126
            ++  +  + K G + R++ E+D R +K+ +TDKG+E+R    + L S ++ L  +  PE
Sbjct: 69  TSTRAIQNLEKEGYVYREKDENDLRAYKVYLTDKGKEMRGVIFEKLVSFIDVLFSDFTPE 128

Query: 127 DARELLRL--HREIITILEQGRE 147
           + +E+ RL  H+  +   E G E
Sbjct: 129 E-KEIFRLLAHKAALKFFEPGFE 150


>CC0396 [K] COG1846 Transcriptional regulators
          Length = 147

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%)

Query: 31  AEKLNITSTQLMVLRKLEAHPDVGITELADLLHLGNSAASGVVDRMVKAGLITRQRSESD 90
           A +  +T+ Q  VL  L       I E AD L L  SA +G++DRM +A L+ R+    D
Sbjct: 29  AAEGGLTAAQSGVLFFLGERDGALIGEAADALDLAPSAMTGLIDRMARAELVERRADAKD 88

Query: 91  RRIFKLAMTDKGREIREQSKQSLRS 115
            R   L +TDKGR  R+ +K  LR 
Sbjct: 89  GRAMHLHLTDKGRAARDTAKAGLRG 113


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,033,692
Number of extensions: 329429
Number of successful extensions: 1577
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 24
Length of query: 151
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 54
Effective length of database: 27,191,033
Effective search space: 1468315782
Effective search space used: 1468315782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)