BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0031.p (350 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0463 [K] COG1316 Transcriptional regulator 152 8e-37 sll1872 [K] COG1316 Transcriptional regulator 139 5e-33 alr2479 [K] COG1316 Transcriptional regulator 132 8e-31 slr0883 [K] COG1316 Transcriptional regulator 128 1e-29 lin2662 [K] COG1316 Transcriptional regulator 125 1e-28 >lin0463 [K] COG1316 Transcriptional regulator Length = 309 Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 21/258 (8%) Query: 77 EPVNILLMGVDARGVKKGEVPRSDTMLVASLDPVKKKFYVFSILRDTYVSIPEHGKERIN 136 + +N+LL+G D+RG +G RSD++++A + + SI+RDTYV IP HGK +IN Sbjct: 64 DEINVLLIGSDSRGEDQG---RSDSLMIAHYNTKTNTPKLVSIMRDTYVDIPGHGKNKIN 120 Query: 137 TAITHG-PNTAMQTVSELLGIPIQYYVYTDFQGFIKLVDAVG--GVDYEVEKDMVYKTKA 193 A ++G P QT+ E G+ +QYYV +F+GF K+VD V G+ EKDM Sbjct: 121 AAYSYGGPELVRQTIKENFGVDVQYYVVANFEGFPKIVDTVAPEGIKINAEKDM------ 174 Query: 194 DGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVISTTSIIK 253 D ++KKG Q +DG LQY RFR DA DF R RQ+ L+A+ ++ I + K Sbjct: 175 -SKNIDANIKKGEQVMDGKTLLQYARFRKDAEGDFGRIRRQQQVLEALKEQAIDVGDVTK 233 Query: 254 LPNILSQVTPYIDTNLDVNDMWKLATVGYDSSMGGSA-----QIPPMNLLTEEKTSGGSA 308 +P+++ ++ Y TN+ L ++G D +G + IP E+ G A Sbjct: 234 IPDVIGKLQGYSSTNIPTG---TLMSIGADFLLGKTETMEKFAIPVEGKWHNERIDGAGA 290 Query: 309 VLGISSENKLKKFVQDTL 326 VL + K +QD L Sbjct: 291 VLRLDDMAANAKALQDFL 308 >sll1872 [K] COG1316 Transcriptional regulator Length = 463 Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 34/239 (14%) Query: 76 TEPVNILLMGVDARGVKKGEVP------------------RSDTMLVASLDPVKKKFYVF 117 + P+N+LL+G V E P +DTM++ LDP +K V Sbjct: 88 SRPINVLLLGTK---VLTSEEPDPSQPNPGYHALVNSVEGLTDTMVLIRLDPKEKSLVVL 144 Query: 118 SILRDTYVSIPEH-GKERINTA-ITHGPNTAMQTVSELLG-IPIQYYVYTDFQGFIKLVD 174 SI RDT V IP + G +IN A GP A TV++LLG +PI Y+ + Q KL+D Sbjct: 145 SIPRDTRVEIPGYSGARKINQANALGGPALAAMTVTDLLGDVPIDRYIRVNVQAVEKLID 204 Query: 175 AVGGVDYEVEKDMVYKTKADGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQ 234 A+GGVD V +DM Y+ D I+LK+G Q LDG ALQ +RFR+DA D R +RQ Sbjct: 205 ALGGVDVYVPRDMKYQD--DSQRLYINLKEGQQRLDGEKALQMLRFRYDALGDIGRIQRQ 262 Query: 235 RGFLKAVADKVISTTSIIKLPNILSQVTPYIDTNLDVNDMWKLATVGYDSSMGGSAQIP 293 + ++AV ++ + +I+++P+I+ + IDTNL++ ++ +A G SAQIP Sbjct: 263 QIVMRAVVEQALKPQTILRIPDIVKILQSNIDTNLNMEELVAIA--------GFSAQIP 313 >alr2479 [K] COG1316 Transcriptional regulator Length = 359 Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 9/228 (3%), Positives = 34/228 (14%), Gaps = 23/228 (10%) Query: 74 EGTEPVNILLMGVDARGVKKGEVPR-----------------SDTMLVASLDPVKKKFYV 116 + + A + P K Sbjct: 93 QHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQ 152 Query: 117 FSILRDTYVSIPEHGKERINTA-ITHGPNTAMQTVSELLG-IPIQYYVYTDFQGFIKLVD 174 + + E + + +++ Sbjct: 153 PVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGI 212 Query: 175 AVGGVDYEVEKDMVYKTKADGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQ 234 + GV ++ + + TR Sbjct: 213 ILYGVSPLEDRSTGADFGCQ--PVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVV 270 Query: 235 RGFLKAVADKVISTTSIIKLPNILSQVTPYIDTNLDVNDMWKLATVGY 282 + + + + + + + ++ D+ Sbjct: 271 AMGYGDGYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDL--GPQAQD 316 >slr0883 [K] COG1316 Transcriptional regulator Length = 481 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 12/215 (5%) Query: 76 TEPVNILLMGVDARGVKKGEVP-------RSDTMLVASLDPVKKKFYVFSILRDTYVSIP 128 + PVNIL+MG+D R E P RSDTML+ DP + + SI RDT V IP Sbjct: 103 SRPVNILVMGID-RVEPTEEEPNVDEFGGRSDTMLLVRFDPRENGLKLLSIPRDTRVFIP 161 Query: 129 EHGKERINTAITHG-PNTAMQTVSELLG-IPIQYYVYTDFQGFIKLVDAVGGVDYEVEKD 186 + G +IN A +G P A + ++ LG +PI YV +LVD VGGV+ V + Sbjct: 162 DVGYTKINDANAYGGPQLAARVINRNLGEVPIDRYVRVTTDALQELVDLVGGVEVFVPRP 221 Query: 187 MVYKTKADGPEYDIDLKKGFQHLDGSMALQYVRFRHDATSDFTRTERQRGFLKAVADKVI 246 M Y+ K + IDL G Q L+G A Q+VRFR+DA D R +RQ LKA+ +++ Sbjct: 222 MFYEDKTQ--QLLIDLPAGLQTLNGQQAEQFVRFRYDANGDIGRVQRQETLLKALQNRLS 279 Query: 247 STTSIIKLPNILSQVTPYIDTNLDVNDMWKLATVG 281 + I ++P + + +DTNL + ++ L G Sbjct: 280 HPSMITRIPKAIGIMQKTVDTNLTMEEILALVNFG 314 >lin2662 [K] COG1316 Transcriptional regulator Length = 349 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 20/259 (7%) Query: 50 KTGEDSPFAAIPSPSAETVQPPKWEGTEPV----NILLMGVDARGVKKGE-VPRSDTMLV 104 K D+ F + + A T+ + EP+ +IL++GVD + PRSD++++ Sbjct: 48 KLAADNSFDNVRNGKASTL---RTNDVEPIKDSFSILIIGVDTSTTRASNGNPRSDSLIL 104 Query: 105 ASLDPVKKKFYVFSILRDTYVSIPEHGKE-----RINTAITHG-PNTAMQTVSELLGIPI 158 A+ + + + SI RD+YV I + KE +IN A +G P M+TV E IPI Sbjct: 105 ATFNVKDARVEMTSIPRDSYVHIEDSAKEINKYTKINAAHAYGGPELTMKTVEEEFKIPI 164 Query: 159 QYYVYTDFQGFIKLVDAVGGVDYEVEKDMVYKTKADGPEYDIDLKKGFQHLDGSMALQYV 218 YYV DF F+K++DA+ G+D +V + + D + I LKKG QHL+ AL Sbjct: 165 DYYVRFDFDAFLKIIDALDGIDVDVPVNFTEQDSKDN-QNAITLKKGPQHLNAEQALALA 223 Query: 219 RFRHDATSDFTRTERQRGFLKAVADKVISTTSIIKLPNILSQVTPYIDTNLDVNDMWKLA 278 R RH SD R +RQ+ +K++ + S +S+ K +I+ V + TNL N M +A Sbjct: 224 RTRH-IDSDIERGKRQQLIIKSIVSEATSVSSVSKYSDIIEVVGDNMKTNLTFNQMLSIA 282 Query: 279 TVGYDSSMGGSAQIPPMNL 297 G M I +NL Sbjct: 283 KFG----MSNKIDIKSLNL 297 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,630,304 Number of extensions: 923575 Number of successful extensions: 3165 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 3082 Number of HSP's successfully gapped: 39 Length of query: 350 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 243 Effective length of database: 26,037,693 Effective search space: 6327159399 Effective search space used: 6327159399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)