BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0013.p (514 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1587 [T] COG4753 Response regulator containing CheY-like rece... 89 2e-17 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 87 7e-17 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 87 8e-17 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 87 9e-17 SP0156 [T] COG4753 Response regulator containing CheY-like recei... 86 2e-16 >SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 494 Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 3/132 (2%) Query: 7 MLTILIADDQREEREGIEFLI--RELGFFLHIETAENGRKALEYLEKNPVDILFTDVRMP 64 M +L+ DD+ +G+ +I + LGF + ++TA +G++AL YL + PVD++ +DV MP Sbjct: 1 MYKVLLVDDEYMILQGLTMIIDWQALGFEV-VQTARSGKEALAYLTQYPVDVMISDVTMP 59 Query: 65 IMDGLQLTTEALTLQPKLKVILFSGFAEFEYAKTAISLGVSEYLLKPINVEAFRNTMQKV 124 M GL L A T P+L+ ++ SG+ EF Y + A+ L YLLKP++ + M++ Sbjct: 60 GMTGLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLKPVDKAELQAKMKQF 119 Query: 125 IAQLTDQEQEHI 136 L Q+ E I Sbjct: 120 KDWLDAQQAESI 131 Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 51/91 (56%) Query: 419 IEDHYGEDLSLDLLAAKIHLSPHYLSSIFKKNTGCGLNKYIKNVRMNIAKDMLQQTHLKV 478 I Y ++L+L +A ++H++ YL FK T +Y+ +VR+ A+ +L T+ + Sbjct: 390 IRKEYHQELTLKAIADRLHVNGVYLGQCFKNETERSFTQYLNHVRIQKAQQLLLYTNQSI 449 Query: 479 SDICYSVGFQNVSYFCQNFRDFFGQTPEKFR 509 ++I Y G+ YF + F+ G +P++FR Sbjct: 450 NEIAYETGYNTNHYFIKMFKKLNGLSPKEFR 480 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 1/128 (0%) Query: 9 TILIADDQREEREGIEFLIRELGFFLHI-ETAENGRKALEYLEKNPVDILFTDVRMPIMD 67 TILI +D+ R+G+ L+ + + I AENGR+A E ++K DI+ TD+ MP ++ Sbjct: 4 TILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMPHLN 63 Query: 68 GLQLTTEALTLQPKLKVILFSGFAEFEYAKTAISLGVSEYLLKPINVEAFRNTMQKVIAQ 127 G+QL + P++ ++ +G+ +F+YA +A+ LGV +YLLKP + + + K+ + Sbjct: 64 GIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQDIEEMLGKIKQK 123 Query: 128 LTDQEQEH 135 L +E+E Sbjct: 124 LDKEEKEE 131 Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 396 LDREYNSSXXXXL--NRDIAAVKQYIEDHYGED-LSLDLLAAKIHLSPHYLSSIFKKNTG 452 LD+E L NR + Q I+ H + SL LA+ + SP YLSS+ KK G Sbjct: 124 LDKEEKEEQLQDLLTNRFEGNMAQKIQSHLADSQFSLKSLASDLGFSPTYLSSLIKKELG 183 Query: 453 CGLNKYIKNVRMNIAKDMLQQTHLKVSDICYSVGFQNVSYFCQNFRDFFGQTPEKFRQ 510 Y+ R+ AK +L T LK+ +I VGF++++YF Q F+ G TP +F++ Sbjct: 184 LPFQDYLVRERVKQAKLLLLTTDLKIYEIAEKVGFEDMNYFTQRFKQIAGVTPRQFKK 241 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 1/126 (0%) Query: 9 TILIADDQREEREGIEFLIRELG-FFLHIETAENGRKALEYLEKNPVDILFTDVRMPIMD 67 T+LI DD+ R G++ + L+++TA + ++A+ L + +D++ TD+RMP M Sbjct: 5 TVLIVDDEPRSRRGLKRTLEAWSPKLLNVQTAASAKEAITRLNEETIDLIITDIRMPEMS 64 Query: 68 GLQLTTEALTLQPKLKVILFSGFAEFEYAKTAISLGVSEYLLKPINVEAFRNTMQKVIAQ 127 GL L PK I+ S ++EFEYA TA+ LGV YLLKP+ E ++ + Sbjct: 65 GLHLVKALQEQNPKPVCIVISAYSEFEYAHTALELGVRHYLLKPVKKEKLIEAVESALQM 124 Query: 128 LTDQEQ 133 +Q++ Sbjct: 125 KKEQDR 130 Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 54/93 (58%) Query: 418 YIEDHYGEDLSLDLLAAKIHLSPHYLSSIFKKNTGCGLNKYIKNVRMNIAKDMLQQTHLK 477 YI+ H + + L +A +HL+P YLS++FK+ T ++Y+ R+ AK +L T Sbjct: 162 YIDAHLDQKIGLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRP 221 Query: 478 VSDICYSVGFQNVSYFCQNFRDFFGQTPEKFRQ 510 +SDI G+Q YF + F++ G TP ++R+ Sbjct: 222 ISDIAEKCGYQTAKYFIKIFKEHEGMTPTQYRK 254 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 3/138 (2%) Query: 7 MLTILIADDQREEREGIEFLIRELGFFLHIETAENGRKALE-YLEKNPVDILFTDVRMPI 65 M+ +LI DD++ EREG++ +++ + A NGR+A+E LE P D++ D++MP Sbjct: 1 MINVLIVDDEQIEREGLKLFLKDRPNIHIVGEASNGRQAIEKALETQP-DLMMMDIKMPG 59 Query: 66 MDGLQLTTEALTLQPKLKVILFSGFAEFEYAKTAISLGVSEYLLKPINVEAFRNTMQKVI 125 +DG+Q E P+ + I+ S F FEYA+ + GV EYLLKP E + +++ Sbjct: 60 VDGVQAVKEIKQQLPETEFIMVSAFDTFEYAREVMRYGVKEYLLKPTTKEDVLTALDRIV 119 Query: 126 AQLTDQEQEHIAAQIKLE 143 ++ +Q +E Q KL+ Sbjct: 120 GEI-EQAREEKNDQYKLQ 136 Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 59/96 (61%) Query: 415 VKQYIEDHYGEDLSLDLLAAKIHLSPHYLSSIFKKNTGCGLNKYIKNVRMNIAKDMLQQT 474 + Y+ DH+ E L+LD LA I LSP+Y+S +FK+ ++Y+ +R+ AK +L T Sbjct: 420 ARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLT 479 Query: 475 HLKVSDICYSVGFQNVSYFCQNFRDFFGQTPEKFRQ 510 + +I Y +G+++ +YF + F+ G++P +R+ Sbjct: 480 QKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRK 515 >SP0156 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 428 Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 1/126 (0%) Query: 7 MLTILIADDQREEREGIEFLIRELGFFLHI-ETAENGRKALEYLEKNPVDILFTDVRMPI 65 M +L+ DD+ EG++ LI + + + TA + +ALEY+++NPVD++ +DV MP Sbjct: 1 MYKVLLVDDEYMVTEGLKRLIPFDKWDMEVVATASHADEALEYVQENPVDVIISDVNMPD 60 Query: 66 MDGLQLTTEALTLQPKLKVILFSGFAEFEYAKTAISLGVSEYLLKPINVEAFRNTMQKVI 125 GL + E + P IL SG+ EF+Y K A++L V +YL+KP++ N ++K+ Sbjct: 61 KTGLDMIREMKEILPDAAYILLSGYQEFDYVKRAMNLSVVDYLVKPVDKVELGNLLEKIA 120 Query: 126 AQLTDQ 131 QL ++ Sbjct: 121 GQLGER 126 Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 59/103 (57%) Query: 408 LNRDIAAVKQYIEDHYGEDLSLDLLAAKIHLSPHYLSSIFKKNTGCGLNKYIKNVRMNIA 467 +N ++ +V + I Y ++LSL ++ + ++P YL + K+ T + + R+ A Sbjct: 320 MNENVVSVLEVIGRDYQKELSLKDISKALFINPVYLGQLIKRETDSTFAELLNKQRIKAA 379 Query: 468 KDMLQQTHLKVSDICYSVGFQNVSYFCQNFRDFFGQTPEKFRQ 510 + +L T + DICY+VG+ N+ YF + FR G++P+ +R+ Sbjct: 380 QQLLLSTSDSIEDICYAVGYSNLGYFYKVFRKLCGKSPKAYRK 422 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,849,050 Number of extensions: 1416501 Number of successful extensions: 4188 Number of sequences better than 1.0e-05: 997 Number of HSP's gapped: 4281 Number of HSP's successfully gapped: 1009 Length of query: 514 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 403 Effective length of database: 25,576,357 Effective search space: 10307271871 Effective search space used: 10307271871 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 118 (50.1 bits)