BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0011.p (296 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 287 1e-77 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 218 6e-57 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 218 6e-57 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 205 8e-53 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 204 1e-52 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 143/295 (48%), Positives = 204/295 (69%), Gaps = 1/295 (0%) Query: 3 NKKDQAAFHLMLAPSIVFLIIFSFIPMFGIVMAFQNYIPAKGISDSAWVGLDNFKFMFQI 62 N + H++L P++V +IF + PMFGIVMAFQ+Y P G + S WVGL +F MF+ Sbjct: 23 NFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEY 82 Query: 63 PDSRQILVNTIVIALWKIIVGTIVSIVFALLLNEIRVRFAKKFMQTVVYLPNFLSWAVLA 122 ++Q++ NT+VI++ K+I G IV I+ ALLLNE+ K+ +QT++YLP FLSW +L Sbjct: 83 DYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILG 142 Query: 123 TVVMNIFSYEGP-VNAFLGWLGIDPVLFMASNHWFRPMLVLTDVWKGFGYGSIIYLASLT 181 +++++ S +G VN LG GIDP+ F+ SN WFR +V++D+WK G+ +I++LA++T Sbjct: 143 GILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAIT 202 Query: 182 AIDPGLYEASSIDGANRFKQLWHITLPGLMXXXXXXXXXXXXXXXXAGFDQIFNLYNPLV 241 A++P LYEA+ +DGANR+KQ HITLP ++ AGFDQIFNLYNPLV Sbjct: 203 AVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLV 262 Query: 242 YATSDIIDTYVYRVGLVERQYSLGTAIGLLRSVVGIVLILSANKLAQKLTDYRIF 296 Y T DIIDTYVYRV LV +S GTA+GL +S++ +VLI+ +LA K ++RIF Sbjct: 263 YQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYKYANWRIF 317 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 118/294 (40%), Positives = 179/294 (60%), Gaps = 3/294 (1%) Query: 5 KDQAAFHLMLAPSIVFLIIFSFIPMFGIVMAFQNYIPAKGISDSAWVGLDNFKFMFQIPD 64 K Q +LM P + ++++F++ P++G MAFQN+ P + WVGL +F +FQ Sbjct: 25 KQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNR 84 Query: 65 SRQILVNTIVIALWKIIVGTIVSIVFALLLNEIRVRFAKKFMQTVVYLPNFLSWAVLATV 124 +L NT+ +++ +IVG + I+FA+LLNE+R K+ +QTV YLP+F+SW V+A + Sbjct: 85 FYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGI 144 Query: 125 VMNIFSYEGP-VNAFLGWLGI--DPVLFMASNHWFRPMLVLTDVWKGFGYGSIIYLASLT 181 V + S +G VN L G PV FMA WF ++ L+D+WK G+ SII+LA++ Sbjct: 145 VTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMA 204 Query: 182 AIDPGLYEASSIDGANRFKQLWHITLPGLMXXXXXXXXXXXXXXXXAGFDQIFNLYNPLV 241 IDP LYEA+ +DGA+R++Q+WHITLPG+ GF++ F L NPLV Sbjct: 205 GIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLV 264 Query: 242 YATSDIIDTYVYRVGLVERQYSLGTAIGLLRSVVGIVLILSANKLAQKLTDYRI 295 S+++D Y GL +YS GTAIG+ SVV I+L+ AN + ++ T+ + Sbjct: 265 VDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 186/287 (64%), Gaps = 1/287 (0%) Query: 11 HLMLAPSIVFLIIFSFIPMFGIVMAFQNYIPAKGISDSAWVGLDNFKFMFQIPDSRQILV 70 +LM+ P +V+ +IF ++PM+G+++AFQ+Y P G++ S WVG +F+ +F P Q+L Sbjct: 39 YLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLR 98 Query: 71 NTIVIALWKIIVGTIVSIVFALLLNEIRVRFAKKFMQTVVYLPNFLSWAVLATVVMNIFS 130 NT+V+ L+ +I V I+ A+LLNEIR+ K+F+QT++Y+P+F+SW ++ ++ +F+ Sbjct: 99 NTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFT 158 Query: 131 YEGPV-NAFLGWLGIDPVLFMASNHWFRPMLVLTDVWKGFGYGSIIYLASLTAIDPGLYE 189 +G V N + + V F+ S WFRP+ +L +W+ G+ +IIY A++ AIDP LYE Sbjct: 159 TDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYE 218 Query: 190 ASSIDGANRFKQLWHITLPGLMXXXXXXXXXXXXXXXXAGFDQIFNLYNPLVYATSDIID 249 A+ +DGANRF+Q+WHITLP + GF+ +F + N + ++I D Sbjct: 219 AAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFD 278 Query: 250 TYVYRVGLVERQYSLGTAIGLLRSVVGIVLILSANKLAQKLTDYRIF 296 TYVY GL E Q+S TA+G +S+VG+++++ AN LA+K + ++ Sbjct: 279 TYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 104/278 (37%), Positives = 172/278 (61%), Gaps = 1/278 (0%) Query: 20 FLIIFSFIPMFGIVMAFQNYIPAKGISDSAWVGLDNFKFMFQIPDSRQILVNTIVIALWK 79 + +IF ++PM+G+++AF++Y P G S WVG D FK F PD ++L NT+++A Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 80 IIVGTIVSIVFALLLNEIRVRFAKKFMQTVVYLPNFLSWAVLATVVMNIFSYE-GPVNAF 138 ++ ++ ALLLNE+R K+ +QT +Y+P+F+SW ++ ++ F+ + G +N Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 139 LGWLGIDPVLFMASNHWFRPMLVLTDVWKGFGYGSIIYLASLTAIDPGLYEASSIDGANR 198 + L + + F++ WFRPM+V+ +WK G+G+I++LA+L +D YEA+ +DGA R Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 199 FKQLWHITLPGLMXXXXXXXXXXXXXXXXAGFDQIFNLYNPLVYATSDIIDTYVYRVGLV 258 F+++WHITLP + GF+Q++ + N L + +DI DTYVY +G+ Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGIT 280 Query: 259 ERQYSLGTAIGLLRSVVGIVLILSANKLAQKLTDYRIF 296 + YS TA+GL +SVVGI+LI AN +A+K +F Sbjct: 281 QGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 171/288 (59%), Gaps = 1/288 (0%) Query: 5 KDQAAFHLMLAPSIVFLIIFSFIPMFGIVMAFQNYIPAKGISDSAWVGLDNFKFMFQIPD 64 K Q LM P +V IF +IPM+G+++AF++Y P KGI S W+G F P+ Sbjct: 15 KKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTKFISSPN 74 Query: 65 SRQILVNTIVIALWKIIVGTIVSIVFALLLNEIRVRFAKKFMQTVVYLPNFLSWAVLATV 124 +L NT+ ++++ +++G + I+ A++LN++ KK +Q ++Y PNF+S V+ + Sbjct: 75 FGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISVVVIVGM 134 Query: 125 VMNIFSYEGPVNAFLGWLGIDPVLFMASNHWFRPMLVLTDVWKGFGYGSIIYLASLTAID 184 + FS GP+N FL G+ F+ + +FRP+ + + +W+G G+ S +Y A+L +D Sbjct: 135 IFLFFSVGGPINNFLSMFGMK-ADFLTNPDFFRPLYIFSGIWQGMGWASTLYTATLVNVD 193 Query: 185 PGLYEASSIDGANRFKQLWHITLPGLMXXXXXXXXXXXXXXXXAGFDQIFNLYNPLVYAT 244 P L EA+ +DGAN F+++WHI +P L G+++ F + L T Sbjct: 194 PALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQTSLNLPT 253 Query: 245 SDIIDTYVYRVGLVERQYSLGTAIGLLRSVVGIVLILSANKLAQKLTD 292 S+II TYVY+VGLV YS TA+GL +V+ +VL+++ N++ +++ + Sbjct: 254 SEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNN 301 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,367,859 Number of extensions: 708919 Number of successful extensions: 2581 Number of sequences better than 1.0e-05: 147 Number of HSP's gapped: 2450 Number of HSP's successfully gapped: 148 Length of query: 296 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 190 Effective length of database: 26,153,027 Effective search space: 4969075130 Effective search space used: 4969075130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)