BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0010.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 263 2e-70 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 191 8e-49 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 189 5e-48 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 184 2e-46 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 161 1e-39 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 131/280 (46%), Positives = 190/280 (67%), Gaps = 6/280 (2%) Query: 19 WILVLAFTLSCLIPLINLVAISFSDNAAASANMVSIFPVNFTLSSYEKLVSDSQFWRSFM 78 + +L F + C++PL+++ A+S S + AA+AN+V PV+FTL +YE+ +++ F RSF+ Sbjct: 17 YTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFL 76 Query: 79 ISVERVVLGLIVNMMLMILAAYPLSKSSKQFRAQKVYMNIVIFAMLFSGGLIPTFMVVKG 138 ISV RVVLG +++M M+ AAY LSK + F+ +K Y+ + MLF+GGL+PT+MVV G Sbjct: 77 ISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTG 136 Query: 139 LHLLDSIWALILPGAVPIANVILLMNAFR-AVPKSLEEAATIDGASQWRILSTIYXXXXX 197 L L ++IWAL+LP A+ N+ILL+N FR AVPKSLEE+A IDGA+ ++I IY Sbjct: 137 LGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISV 196 Query: 198 XXXXXXXXXXIVGHWNDYFSALVYINKTSNYPLQTYIQQLSV--DVQNITDPQKLIEYSK 255 +V HWN +F ++Y N NYPLQT++Q + V D ITD + L Sbjct: 197 PAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQITDAETL---RN 253 Query: 256 ISNRTLNAAKIVISTLPLLLIYPFMQKYFVTGIVVGSVKE 295 +S RT+ AA+I I+ LP+L++YPF+QKYFV GIV+G+ KE Sbjct: 254 LSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 191 bits (486), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 171/287 (59%), Gaps = 3/287 (1%) Query: 9 VKSRIADTIIWILVLAFTLSCLIPLINLVAISFSDNAAASANMVSIFPVNFTLSSYEKLV 68 +K+R+ D +I+ +L F L C++P I+++A SF+ + + P F+L +Y + Sbjct: 1 MKNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIF 60 Query: 69 SDSQFWRSFMISVERVVLGLIVNMMLMILAAYPLSKSSKQFRAQKVYMNIVIFAMLFSGG 128 S ++S ++SV V+G V+M L L AY LS+ + ++ M +V+F MLFSGG Sbjct: 61 STDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSR--RDLIGRQPLMFLVVFTMLFSGG 118 Query: 129 LIPTFMVVKGLHLLDSIWALILPGAVPIANVILLMNAFRAVPKSLEEAATIDGASQWRIL 188 +IPTF+VVK L LLDS WALILP A+ N+I+L N F+ +P SLEE+A IDG + I Sbjct: 119 MIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIF 178 Query: 189 STIYXXXXXXXXXXXXXXXIVGHWNDYFSALVYINKTSNYPLQTYIQQLSVDVQNIT-DP 247 I V +WN Y +A++Y+N ++ +P+Q ++Q+ + + D Sbjct: 179 FKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDM 238 Query: 248 QKLIEYSKISNRTLNAAKIVISTLPLLLIYPFMQKYFVTGIVVGSVK 294 ++ S +T+ A IV++T+P+LL+YPF+QK+F G ++GSVK Sbjct: 239 SEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 168/289 (58%), Gaps = 3/289 (1%) Query: 7 HSVKS-RIADTIIWILVLAFTLSCLIPLINLVAISFSDNAAASANMVSIFPVNFTLSSYE 65 H+ K+ R+ D + + ++P + ++A SF+ A + IFP FTL +Y+ Sbjct: 8 HNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYK 67 Query: 66 KLVSDSQFWRSFMISVERVVLGLIVNMMLMILAAYPLSKSSKQFRAQKVYMNIVIFAMLF 125 + S F RS +S+ V+G V + AYPL+K + + + + +N+VIF+MLF Sbjct: 68 YVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAK--RHVKGRNLLLNLVIFSMLF 125 Query: 126 SGGLIPTFMVVKGLHLLDSIWALILPGAVPIANVILLMNAFRAVPKSLEEAATIDGASQW 185 SGG+IPT++VVK L LLD+ WALILP A+ N+I++ N F+ +P+ LEE+A IDG S+ Sbjct: 126 SGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEI 185 Query: 186 RILSTIYXXXXXXXXXXXXXXXIVGHWNDYFSALVYINKTSNYPLQTYIQQLSVDVQNIT 245 + I VG WND+F AL+YIN ++ +PLQ ++Q+++ Sbjct: 186 GVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTA 245 Query: 246 DPQKLIEYSKISNRTLNAAKIVISTLPLLLIYPFMQKYFVTGIVVGSVK 294 ++ + + + A IVI+TLP+L +YPF+QK+F G+++GSVK Sbjct: 246 TNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 171/293 (58%), Gaps = 4/293 (1%) Query: 4 IYTHSVKSRIADTIIWILVLAFTLSCLIPLINLVAISFSDNAAASANMVSIFPVNFTLSS 63 ++ S+ SR+ + ++ + F++ C +P +++VA SF+ +FP F+L + Sbjct: 2 VHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDA 61 Query: 64 YEKLVSDSQFWRSFMISVERVVLGLIVNMMLMILAAYPLSKSSKQFRAQKVYMNIVIFAM 123 Y + S +RS +IS+ V+G +M L L AY LS+ K ++V M +V+F M Sbjct: 62 YRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSR--KDLDGRRVLMFLVVFTM 119 Query: 124 LFSGGLIPTFMVVKGLHLLDSIWALILPGAVPIANVILLMNAFRAVPKSLEEAATIDGAS 183 LFSGG+IPTF+VV+ L LLD+ WALI+P A+ N+I+L N F+ +P+SLEE+A IDG + Sbjct: 120 LFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCN 179 Query: 184 QWRILSTIYXXXXXXXXXXXXXXXIVGHWNDYFSALVYINKTSNYPLQTYIQQLSVDVQN 243 I I V +WN + A++Y+N +S +P+Q ++Q+ + Sbjct: 180 DVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSG 239 Query: 244 IT-DPQKL-IEYSKISNRTLNAAKIVISTLPLLLIYPFMQKYFVTGIVVGSVK 294 + D +L + +T+ A IV++T+P+L++YPF+QK+F G ++GSVK Sbjct: 240 MQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 13/299 (4%) Query: 7 HSVKSRIADT--------IIWILVLAFTLSCLIPLINLVAISFSDNAAASANMVSIFPVN 58 S+K+ I DT + I+++ L L+PL+ +V SF D + +S P + Sbjct: 8 ESMKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPAD 67 Query: 59 FTLSSYEKLVSDSQFWRSFMISVERVVLGLIVNMMLMILAAYPLSKSSKQFRAQKVYMNI 118 +T+ Y+++ SD R F+ S+ + ++L + AYPLSK R Y I Sbjct: 68 WTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLI 127 Query: 119 VIFAMLFSGGLIPTFMVVKGLHLLDSIWALILPGAVPIANVILLMNAFRAVPKSLEEAAT 178 V M F GGL+PT+++VK L +L++ WA+I+PGAV + N+IL F+ +P+ L EAA Sbjct: 128 V--TMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAV 185 Query: 179 IDGASQWRILSTIYXXXXXXXXXXXXXXXIVGHWNDYFSALVYINKTSNYPLQTYIQQL- 237 IDGA+ +I I VG WN YF A++YI + PLQ ++++ Sbjct: 186 IDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKIL 245 Query: 238 --SVDVQNITDPQKLIEYSKISNRTLNAAKIVISTLPLLLIYPFMQKYFVTGIVVGSVK 294 S Q++ Q + K + A IVIS+LPL+++YPF QKYF GI+ GS+K Sbjct: 246 IQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLK 304 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,567,742 Number of extensions: 596475 Number of successful extensions: 2287 Number of sequences better than 1.0e-05: 129 Number of HSP's gapped: 2105 Number of HSP's successfully gapped: 129 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)