BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0008.p (392 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1563 [P] COG0605 Superoxide dismutase 306 4e-83 BS_sodF [P] COG0605 Superoxide dismutase 300 2e-81 VNG1332G [P] COG0605 Superoxide dismutase 179 7e-45 all0070 [P] COG0605 Superoxide dismutase 179 8e-45 BH1409 [P] COG0605 Superoxide dismutase 179 9e-45 >BH1563 [P] COG0605 Superoxide dismutase Length = 346 Score = 306 bits (784), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 13/219 (5%), Positives = 32/219 (14%), Gaps = 2/219 (0%) Query: 174 ASPLSGQQEPGTVPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENK 233 S G + + + K Q+ L + Sbjct: 77 GSREKLIIAS--KVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWP 134 Query: 234 LAEARKTKDFDLVKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSY 293 + + G + + + Sbjct: 135 QRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLAD 194 Query: 294 DAFKEQFTEAANKVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAY 353 + N + V + E + + L + Sbjct: 195 KHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGA 254 Query: 354 YLKHQNNRADYIKDWWKVVHWPYVSERFNAARKLVWQPF 392 + Y + + YV Sbjct: 255 RNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMAL 293 >BS_sodF [P] COG0605 Superoxide dismutase Length = 346 Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 7/207 (3%), Positives = 30/207 (14%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 L D+ + + + + Sbjct: 75 KHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWP 134 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 + + + + ++ A+ Sbjct: 135 QRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLAD 194 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 K + + + + + + + + Sbjct: 195 KHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGA 254 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 ++ Y E+ A Sbjct: 255 RNTLFSRFTRYSGEQTQKAVAAYVDIA 281 >VNG1332G [P] COG0605 Superoxide dismutase Length = 346 Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 20/197 (10%), Positives = 38/197 (19%), Gaps = 2/197 (1%) Query: 191 HTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDLVKHWE 250 H +P + L + H + + N + A + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 251 RELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAANKVEGG 310 + G H ++ P+ I + + K Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL-- 121 Query: 311 GWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYIKDWWK 370 L S D P ++L A + + YI + Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE 181 Query: 371 VVHWPYVSERFNAARKL 387 L Sbjct: 182 TAFGVMRYLHLADKHDL 198 >all0070 [P] COG0605 Superoxide dismutase Length = 346 Score = 179 bits (453), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 11/201 (5%), Positives = 31/201 (15%), Gaps = 8/201 (3%) Query: 193 LPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKT------KDFDLV 246 A + + + +++ + + K + L Sbjct: 68 YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLD 127 Query: 247 KHWERE-LAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 + L + + L + Y + Sbjct: 128 LYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVM 187 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 + + + + V L Y+ Sbjct: 188 RYLHLADKHDLPRIVT-IQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYL 246 Query: 366 KDWWKVVHWPYVSERFNAARK 386 + RF Sbjct: 247 NGAKPAGARNTLFSRFTRYSG 267 >BH1409 [P] COG0605 Superoxide dismutase Length = 346 Score = 179 bits (453), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 10/200 (5%), Positives = 31/200 (15%), Gaps = 9/200 (4%) Query: 193 LPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKA-ENKLAEARKT-----KDFDLV 246 P + + + + +D N + A + + Sbjct: 5 RIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGL 64 Query: 247 -KHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 + + I V P A++ + Sbjct: 65 TETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTD 124 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 ++ + L + ++ L ++ Sbjct: 125 YLDLYQVHWPQ--RPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNET 182 Query: 366 KDWWKVVHWPYVSERFNAAR 385 Sbjct: 183 AFGVMRYLHLADKHDLPRIV 202 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.132 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,228,599 Number of extensions: 1292751 Number of successful extensions: 2127 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 2027 Number of HSP's successfully gapped: 44 Length of query: 392 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 284 Effective length of database: 25,922,359 Effective search space: 7361949956 Effective search space used: 7361949956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)