BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0002.p (202 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1409 [P] COG0605 Superoxide dismutase 298 3e-81 BS_sodA [P] COG0605 Superoxide dismutase 276 2e-74 SA1382 [P] COG0605 Superoxide dismutase 263 1e-70 SA0128 [P] COG0605 Superoxide dismutase 253 1e-67 PA4468 [P] COG0605 Superoxide dismutase 243 1e-64 >BH1409 [P] COG0605 Superoxide dismutase Length = 346 Score = 298 bits (764), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 10/202 (4%), Positives = 27/202 (13%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M + + E + + + + A ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 + E G + +V +D + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 W D+ + L + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 Sbjct: 181 ETAFGVMRYLHLADKHDLPRIV 202 >BS_sodA [P] COG0605 Superoxide dismutase Length = 206 Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 85/198 (42%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M++ LP+LPY +ALEPH D TMEIHH +HH TYV N NAALE PE +EEL+T Sbjct: 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITK 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L+ +P +T +RNN GGHANH+LFW+ + D K + + A Sbjct: 61 LDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKA 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 A+ G W L + T+ + + + + Y K + Sbjct: 121 AASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQN 180 Query: 181 YIKAFWNVVNWEEVGKRY 198 + Sbjct: 181 RRPDYIKEFWNVVNWDEA 198 >SA1382 [P] COG0605 Superoxide dismutase Length = 346 Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 9/202 (4%), Positives = 25/202 (12%), Gaps = 3/202 (1%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M + + E + + + + A + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI-NLIDVAEMYPVPPRP 59 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 G + + + + + Sbjct: 60 ETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRP--DQALDRKNIREALHDS 117 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 + S A +L Y + + Sbjct: 118 LKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 V Sbjct: 178 VSNETAFGVMRYLHLADKHDLP 199 >SA0128 [P] COG0605 Superoxide dismutase Length = 346 Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 9/202 (4%), Positives = 25/202 (12%), Gaps = 3/202 (1%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M + + E + + + + A + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI-NLIDVAEMYPVPPRP 59 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 G + + + + + Sbjct: 60 ETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRP--DQALDRKNIREALHDS 117 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 + S A +L Y + + Sbjct: 118 LKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 V Sbjct: 178 VSNETAFGVMRYLHLADKHDLP 199 >PA4468 [P] COG0605 Superoxide dismutase Length = 346 Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 7/202 (3%), Positives = 23/202 (11%), Gaps = 2/202 (0%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 M + + E + + + + A ++ + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVA-EMYPVPPRP 59 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 G + + + + Sbjct: 60 ETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLK 119 Query: 121 TAATTRFGSGWAWL-VVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRP 179 T D+ + L Sbjct: 120 RLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVS 179 Query: 180 DYIKAFWNVVNWEEVGKRYESA 201 + Sbjct: 180 NETAFGVMRYLHLADKHDLPRI 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,333,977 Number of extensions: 628509 Number of successful extensions: 1588 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 1492 Number of HSP's successfully gapped: 44 Length of query: 202 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 101 Effective length of database: 26,729,697 Effective search space: 2699699397 Effective search space used: 2699699397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 113 (48.1 bits)