BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0019.p (729 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0542 [NT] COG0840 Methyl-accepting chemotaxis protein 146 9e-35 VC0514 [NT] COG0840 Methyl-accepting chemotaxis protein 105 3e-22 BH1827 [NT] COG0840 Methyl-accepting chemotaxis protein 92 3e-18 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein 91 1e-17 SMc00975 [NT] COG0840 Methyl-accepting chemotaxis protein 87 1e-16 >CAC0542 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 575 Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 102/323 (31%), Positives = 167/323 (51%), Gaps = 36/323 (11%) Query: 373 RPIPQLTAAFRQAMT------GDLSARAKVNAKGEIGVLAGGFNELIASQQNMXXXXXXX 426 RPI + + A ++ ++ GDLS R VN K EIG L G + I +++ Sbjct: 216 RPIVKASRAIKEIISDIENNDGDLSKRIYVNTKDEIGELTLGVDAFIERLEDI------- 268 Query: 427 XXXXXXAVGNAETNVSALDGS--------------ISEISAITEELSAGMEQTAASMEEL 472 +G T+ + L+GS + E SA +E++AGME+TAAS+EE+ Sbjct: 269 -------IGKIRTSSATLEGSSKLLLEQISSSNIKVEETSATVQEIAAGMEETAASVEEI 321 Query: 473 NAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAERLKEGAGRSRRQADEMYGQSEEKLR 532 NA T++IE+AV I ++ +A +K A S++ A E+ +E L Sbjct: 322 NASTDDIENAVEKIALKAQSGSVATQKVNS--KANEIKVKAVSSQKAASEIIQVVQENLE 379 Query: 533 KAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASIXXXXXXXXXXXXXXXXXXIRKLAEN 592 KA+ +S+ +I+ LT +IL+I QT++L+LNA+I I+ LAE+ Sbjct: 380 KALVKSKDVEKINLLTSSILEITEQTNVLALNAAIEASRAGEAGKGFAVVADEIKALAED 439 Query: 593 SRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDRQVLKDYDSMQETGRQYSEDAGYIHE 652 S A+EIQ + V+ +V+NL ++++L F+ QV+KDYD +Y+ DA I + Sbjct: 440 SGRIASEIQSINSIVIESVKNLAGDSKSVLDFISNQVIKDYDMFVGVSEEYTNDATAISQ 499 Query: 653 LVTDFSATSGQLLASIQSMHSAI 675 L+ +F+ T+ QL S+ + AI Sbjct: 500 LMNNFNDTADQLKTSVNGIVIAI 522 >VC0514 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 626 Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 113/515 (21%), Positives = 202/515 (39%), Gaps = 66/515 (12%) Query: 168 GLDGVNKLITQD-EFEPPADYNLKERGWYSLTAKNKRTTVTDPYIDAGSGKMVVSVSAPI 226 G D K+I D +EP DY+ + RGWY KNKR +T+PY+D +VS+S+P+ Sbjct: 102 GFDSNGKVIENDPNWEPEDDYDPRSRGWYQEAKKNKRIFITEPYLDTEGKNFLVSISSPV 161 Query: 227 LDESGKLIGVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFIHHPDSDNILLKKMSD 286 D IG D+ +I + + N +GY + TG I H ++D L K + D Sbjct: 162 ADTMNNFIGAMYFDVDLSRIQKNVDDINLFEAGYVFITSNTGKVIIHSNTDE-LGKNVKD 220 Query: 287 LGGNWKMLGDQMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQRLQGFQ 346 + +++ ++V ++GV ++ +P++ W + ++ + A Q + + Sbjct: 221 IYNGFRLDKGKVV--------LSVNGVNKWLYTSPILGGDWFIIAVIDESIAMQSINKMK 272 Query: 347 QXXXXXXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAMT--GDLSARAKVNAKGEIGV 404 P+ L +A + + GDL+ + N E Sbjct: 273 YELIFYSAIGLVFGGLILVFILRRLMSPLKTLDSAIKDIASGGGDLTKKLDTNLDKEFSE 332 Query: 405 LAGGFN---ELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGSISEISAITEELSAG 461 LA GFN E++ SQ I ++ I + G Sbjct: 333 LALGFNSFTEMLGSQ-------------------------------IRQLKTIASGVLDG 361 Query: 462 MEQTAASMEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXR--AERLKEGAGRSRRQ 519 E+TA E + + + ++ + A+ KEG S Sbjct: 362 AEKTANEAEVSRLVVEQQLQELEQLATAMNEMAMTASEVANSAQVAADAAKEGESASLEG 421 Query: 520 ADEMYGQSEEKLRKAIEQSRSTAQIHALTGA------ILD----IAAQTSLLSLNASIXX 569 + ++ ++ R +I S + L A +LD IA QT+LL+LNA+I Sbjct: 422 SSVVHETTDAIQRLSIRIGSSVEDVKELVKATDRIETVLDVINDIADQTNLLALNAAIEA 481 Query: 570 XXXXXXXXXXXXXXXXIRKLAENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDRQV 629 +R LA+ ++++ +I E+ +E L EGA+N+ R +D Sbjct: 482 ARAGESGRGFAVVADEVRTLAQRTQQSTMQISEI-------IEQLQEGAKNVSRSMDESK 534 Query: 630 LKDYDSMQETGRQYSEDAGYIHELVTDFSATSGQL 664 L + D + E Q +E + + + S + Q+ Sbjct: 535 L-ETDIVVEKTNQVNEKISLVQQAIHRISDMNLQI 568 >BH1827 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 678 Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 110/465 (23%), Positives = 186/465 (40%), Gaps = 60/465 (12%) Query: 166 YVGLDGVNKLITQDEFEPPADYNLKERGWYSLTAKNKRTTV-TDPYIDAGSGK--MVVSV 222 Y+G + E E P DY+ + R WY A+ V ++PY+ A G M+V+V Sbjct: 110 YIGQQSNGNFYSYPEVELPDDYDPRARPWYEKAAETPEQVVWSEPYLSATVGHEVMMVTV 169 Query: 223 SAPILD-ESGKLIGVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFIHHPDSDNILL 281 + I+D + +L+GV DI + ++Q L+ G LI ++G I HPD+D + Sbjct: 170 AKAIVDPRNQQLLGVVAIDILLDDLSQLLNETEVGMGGSLALIHESGMVIAHPDAD-LRG 228 Query: 282 KKMSDLGGNWKMLGD-QMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQ 340 + +SD + D Q Q I E + A + + + + W++ K Sbjct: 229 ENLSDES----FIQDLQQAQGKQGQIEYEFENEARTLFFNKMDQMDWNIVAFYRDKEVTA 284 Query: 341 RLQGFQQXXXXXXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAMTGDLSARAKVNAKG 400 ++ + PI L +Q + GDL+A A V ++ Sbjct: 285 PVRQLRNYFILVLLVSMTIATATSYYFGRKMANPILALNDRMQQVIKGDLTASADVKSQD 344 Query: 401 EIGVLAGGFNELIASQQNM-----------XXXXXXXXXXXXXAVGNAE----TNVSALD 445 EIG L+ GFN+++ + + M A+ ++E ++ + + Sbjct: 345 EIGQLSDGFNQMVQTLREMIHALRQTGATSNKEAVELRSMLQEAIASSEEVATSSTAVAN 404 Query: 446 GSISEISAI------TEELSA---GMEQTAASMEELNAGTNEIEHAVSGIXXXXXXXXXX 496 G++ + I E+LSA M+QTA+ + EL A T + + SG+ Sbjct: 405 GAVDQAEEIEHAKSDIEKLSAQIDWMDQTASQINELAASTANV--SASGL---------- 452 Query: 497 XXQIXXXXRAERLKEGAGRSRRQADEMYGQSEEKLRKAIEQSRSTAQIHALTGAILDIAA 556 + E L+E R +M G + + T +I ++ I + Sbjct: 453 -------EQVETLREKTEEHERIIQKMEGIVNHFVHQ-------TEEILSIVELIQSFSE 498 Query: 557 QTSLLSLNASIXXXXXXXXXXXXXXXXXXIRKLAENSRETAAEIQ 601 QT+LL+LNASI IRKLAE S + IQ Sbjct: 499 QTNLLALNASIEAARAGEYGKGFSVVAEEIRKLAEQSTKATNNIQ 543 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 617 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 106/460 (23%), Positives = 172/460 (37%), Gaps = 53/460 (11%) Query: 165 VYVGLDGVNKLITQDEFEPPADYNLKERGWYSLTAKNKRTTVTDPYIDAGSGKMVVSVSA 224 VYVG + PP Y+ R WY A+ + VT PY+ A +GK+VV+ + Sbjct: 111 VYVGYPDKSYKFADPSGVPPT-YDPTARPWYKQAAEAGKPVVTPPYVSASTGKLVVTFAV 169 Query: 225 PILDESGKLIGVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFIHHPDSDNILLKKM 284 PIL + G L GV +D+S + + + A + + + L++ G + HPD D LK + Sbjct: 170 PILRDGG-LKGVVASDVSMDAVIANVKAIHPTPASFGFLVNAAGKIVAHPD-DKFTLKPV 227 Query: 285 SDLGGNWKMLGDQMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQRLQG 344 +DL + + ++ + G A + V W + + + + A G Sbjct: 228 TDLSADLSDATLAALAQTDKPLQVNVGGAAKLLHRQGVQGTDWGLVVALDKSDAT---AG 284 Query: 345 FQQXXXXXXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAM------TGDLSARAKVNA 398 + R +L+ R AM +GDL+ R + Sbjct: 285 MRSLVTTSIGVLVVVALVAAAIVGAMTARAFRRLS-MIRDAMDDIGSGSGDLTKRLPADG 343 Query: 399 KGEIGVLAGGFNELIAS-----QQNMXXXXXXXXXXXXXAVGNAETNVSALDGSISEISA 453 + E+ +A FN QQ A GNA ++S Sbjct: 344 QDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRSAAQEIAAGNA------------DLSQ 391 Query: 454 ITEELSAGMEQTAASMEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAERLKEGA 513 TEE ++ +E+TA+SMEEL + + +A L A Sbjct: 392 RTEEQASSLEETASSMEELTSIVKQ--------------------NADNARQASSLAVNA 431 Query: 514 GRSRRQADEMYGQSEEKLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASIXXXXXX 573 + + GQ + + E S+ A I G I IA QT++L+LNA++ Sbjct: 432 SDVATRGGSVVGQVVQTMGGINESSKKIADI---IGVIESIAFQTNILALNAAVEAARAG 488 Query: 574 XXXXXXXXXXXXIRKLAENSRETAAEIQEVTGAVVAAVEN 613 +R LA+ S A EI+ + V V N Sbjct: 489 EQGRGFAVVASEVRSLAQRSAGAAKEIKALIHDSVDRVSN 528 >SMc00975 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 698 Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 9/157 (5%) Query: 166 YVGLDGVNKLITQDEFEPPADYNLKERGWYSLTAKNKRTTVTDPYIDAGSGKMVVSVSAP 225 YVG + +I D + P Y+ ++R WY K +T+PY+DA SG +++S + P Sbjct: 101 YVGNESGQFMIWPDS-KMPDGYDPRQRPWYQQAVKADARVLTEPYVDASSGDLIISAAVP 159 Query: 226 ILDESGKLIGVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFIHHPDSDNILLKKMS 285 + E GKL GV G+D S + + ++ + G G+A L +K G + HP++ ++ K ++ Sbjct: 160 VKHE-GKLYGVTGSDFSLKALVSMVNGIDVGGEGFAFLANKDGQILVHPNA-KLVTKTLA 217 Query: 286 DLGGNWKMLGDQMVQWGSNVIRTEIDGVASYVSYAPV 322 D G+ ++ TE+DG VS+ PV Sbjct: 218 D------AFPVDPPAIGTGIMHTELDGKPMLVSFVPV 248 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.311 0.128 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 40,250,091 Number of extensions: 1392816 Number of successful extensions: 6726 Number of sequences better than 1.0e-05: 637 Number of HSP's gapped: 6885 Number of HSP's successfully gapped: 646 Length of query: 729 Length of database: 38,378,431 Length adjustment: 114 Effective length of query: 615 Effective length of database: 25,230,355 Effective search space: 15516668325 Effective search space used: 15516668325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 120 (50.8 bits)