BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0442.0007.p
         (748 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1246 [M] COG3637 Opacity protein and related surface antigens      357   4e-98
MK0795 [R] COG2144 Selenophosphate synthetase-related proteins         51   7e-06

>STM1246 [M] COG3637 Opacity protein and related surface antigens
          Length = 432

 Score =  357 bits (916), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 0/533 (0%), Positives = 0/533 (0%), Gaps = 47/533 (8%)

Query: 38  MGRKPNYTEIGVFSVMWSEHCAYKNSKPLLGRFPTSGPRVLMGPGEG-AGIVDIGDNQAV 96
                      + + + SE         + G                          +  
Sbjct: 13  RRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKV-------PMNIVAQRYGASVRQD 65

Query: 97  VFKIESHNHPSAVEPYQGAATGVGGIIRDIFSMGARPVALMNSLRFGKLESDRVKYLFEH 156
           V       +       +                                         E 
Sbjct: 66  VLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPE--------VEL 117

Query: 157 VVSGIAGYGNCIGIPTVGGEIMFDNSYDGNPLVNAMCVGLIDHDKIQRGVAKGVGNPVFY 216
                      I   T        ++            G ++ +        G  +   +
Sbjct: 118 QGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEF 177

Query: 217 VGPPTGRDGIHGATFASVELSEESEAKKTAVQVGDPFMEKLVMESCLELIDSGIVLGIQD 276
            G       +       +   E+   K                E   E +         +
Sbjct: 178 EGGKASDFVLAMGQGRMIPGFED-GIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAIN 236

Query: 277 MGAAGLTCSSAEMASKAGNGLELYLDQVPQREDGMTPYEMMLSESQERMLFVVEPKDEAQ 336
           +            A                R +     E  L  +    +     +   +
Sbjct: 237 LKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVK 296

Query: 337 AQEIFDRWGVICRKVGKVTDDGRLKLFHHGEVVGDMPVKALVD---ECPIYKKPSAVPAY 393
           A +I     +I  ++  +      +   + +   ++P +   +      +          
Sbjct: 297 ANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIR 356

Query: 394 YEENASVDTLRYAEVKDLGGALHTVLASPTVASKAWVYNQYDYMVRTSTAVRPGSDAAVV 453
                       A+                   +     +                +   
Sbjct: 357 -------TNELKADE-----------------ERVKGLIEEMASAYEDPKEVIEFYSKNK 392

Query: 454 TIHGTRKGLAMTTDCNGRYVYLDPEVGGRIAVSEAARNIVCSGAKPLAITDNLNFGSPEK 513
            +                                                          
Sbjct: 393 ELM-                                                         451

Query: 514 PEIFWQMERAVDGMAEACRVLDTPVIGGNVSLYNENASGAIYPTPVVGMVGLV 566
                                                                
Sbjct: 452 --                                                    502



 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/241 (7%), Positives = 41/241 (17%), Gaps = 40/241 (16%)

Query: 475 LDPEVGGRIAVSEAARNIVCSGAKPLAITDNLNFGSPEKPEIFWQMERAVDGMAEAC--- 531
              +     A +           +    +                +   V+         
Sbjct: 78  AIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFE------------VYPEVELQGLEAIEV 125

Query: 532 -RVLDTPVIGGNV---SLYNENASGAIYPTPVVGMV--GLVEDTDHITTQAFKQEGDAIL 585
            + +                +                 G VE  +   T  F    D   
Sbjct: 126 EKPIVEVTDADVDGMLDTLRKQ--------QATWKEKDGAVEA-EDRVTIDFTGSVDGEE 176

Query: 586 LLGVTKAELGGSEFQYAVHGLTEGRPPEL-----DLATEQKLLDAVLAAIRSGLVRSAHD 640
             G   ++   +  Q  +    E                    +     ++    + A +
Sbjct: 177 FEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAIN 236

Query: 641 XXXXXXXXXXXXXCISGSIGANVEWSAGGLRR-DVA----LFSESQSRIVLTAAPGRAEE 695
                                  + S  GLR             +    V + A     +
Sbjct: 237 LKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVK 296

Query: 696 L 696
            
Sbjct: 297 A 297


>MK0795 [R] COG2144 Selenophosphate synthetase-related proteins
          Length = 346

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 14/301 (4%), Positives = 39/301 (12%), Gaps = 40/301 (13%)

Query: 77  VLMGPGEGAGIVDIGDNQAVVFKIESHNHPSAVEPYQGAATGVGGIIRDIFSMGARPVAL 136
                      +     +     +      + +  +      +        S        
Sbjct: 41  AQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIR 100

Query: 137 MNSLRFGKLESDRVKYLFEHVVSGIAGYGNCIGIPTVGGEIMFDNSYDGNPLVNAMCVGL 196
            +     K    R                       V       N +     +       
Sbjct: 101 PDQALDRKN--IREALHDSLKRLQTDYLDL----YQVHWPQRPTNCFGK---LGYSWTDS 151

Query: 197 IDHDKIQRGVAKGVGNPVFYVGPPTGRDGIHGATFASVELSEESEAKKTAVQVGDPFMEK 256
                +   +               G       +  +                 D     
Sbjct: 152 APAVSLLDTLDALAEYQRAGKIRYIGV------SNETAFGVMRYLHLA------DKHDLP 199

Query: 257 LVMESCLELIDSGIVLGIQDMGAAGLTCSSAEMASKAGN-GLELYLDQVPQRED-GMTPY 314
            ++        S +    +   A        E+ + +      L    +   +  G    
Sbjct: 200 RIVTIQNPY--SLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNT 257

Query: 315 EMMLSESQERMLFVVEPKDEAQAQEIFDRWGVICRKVGKVTDDGRLKLFHHGEVVGDMPV 374
                          + +                                   V     V
Sbjct: 258 LFSRF----TRYSGEQTQKAVA-----------AYVDIARRHGLDPAQMALAFVRRQPFV 302

Query: 375 K 375
            
Sbjct: 303 A 303


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 56,252,621
Number of extensions: 2534320
Number of successful extensions: 6042
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6036
Number of HSP's successfully gapped: 4
Length of query: 748
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 634
Effective length of database: 25,230,355
Effective search space: 15996045070
Effective search space used: 15996045070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)