BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0442.0005.p
         (81 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA1964 [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase      58   3e-09
MTH1693 [L] COG0468 RecA/RadA recombinase                              48   3e-06
MTH1694 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase       48   3e-06
MTH1696 [B] COG2036 Histones H3 and H4                                 48   3e-06

>NMA1964 [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase
          Length = 252

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 3/79 (3%), Positives = 11/79 (13%), Gaps = 1/79 (1%)

Query: 3  KATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLKEM 62
                   +  ++         +  V             +        R         M
Sbjct: 9  YLHFSAERSRPAVELLARVPLENVEYVADL-GCGPGNSTALLQQRWPAARITGIDSSPAM 67

Query: 63 CEKLLANTVIEDYRYELED 81
            +  +      +      
Sbjct: 68 IAEARSALPDCQFVEADIR 86


>MTH1693 [L] COG0468 RecA/RadA recombinase
          Length = 268

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 4/70 (5%), Positives = 15/70 (21%), Gaps = 1/70 (1%)

Query: 6  VYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLKEMCEK 65
                    +   + ++     +      S+   K + +  D  +      R       
Sbjct: 7  SIFIPDSLTAETGDLKIKTYKVVLIA-RAASIFGVKRIVIYHDDADGEARFIRDILTYMD 65

Query: 66 LLANTVIEDY 75
                 + +
Sbjct: 66 TPQYLRRKVF 75


>MTH1694 [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase
          Length = 268

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 4/70 (5%), Positives = 15/70 (21%), Gaps = 1/70 (1%)

Query: 6  VYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLKEMCEK 65
                    +   + ++     +      S+   K + +  D  +      R       
Sbjct: 7  SIFIPDSLTAETGDLKIKTYKVVLIA-RAASIFGVKRIVIYHDDADGEARFIRDILTYMD 65

Query: 66 LLANTVIEDY 75
                 + +
Sbjct: 66 TPQYLRRKVF 75


>MTH1696 [B] COG2036 Histones H3 and H4
          Length = 268

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 4/70 (5%), Positives = 15/70 (21%), Gaps = 1/70 (1%)

Query: 6  VYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLKEMCEK 65
                    +   + ++     +      S+   K + +  D  +      R       
Sbjct: 7  SIFIPDSLTAETGDLKIKTYKVVLIA-RAASIFGVKRIVIYHDDADGEARFIRDILTYMD 65

Query: 66 LLANTVIEDY 75
                 + +
Sbjct: 66 TPQYLRRKVF 75


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,430,473
Number of extensions: 177895
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 4
Length of query: 81
Length of database: 38,378,431
Length adjustment: 52
Effective length of query: 29
Effective length of database: 32,381,063
Effective search space: 939050827
Effective search space used: 939050827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)