BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0017.p
         (91 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins    65   2e-11
BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins     62   3e-10

>BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 85

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 0/87 (0%), Positives = 0/87 (0%), Gaps = 1/87 (1%)

Query: 2  QKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXXX 61
          Q+   IT  +G+H RPA   V  A  +  +E    + GK  + KS+  + +         
Sbjct: 3  QQEVTITAPNGLHTRPAAQFVKEAKGF-TSEITVTSNGKSASAKSLFKLQTLGLTQGTVV 61

Query: 62 XXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                                     
Sbjct: 62                             88


>BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 87

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 2  QKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXXX 61
          +KTF IT E GIHARPAT LVN A +Y ++E   E +GK V LKSI+GV+S         
Sbjct: 3  EKTFTITAETGIHARPATQLVNKAGQY-SSEITLEYKGKAVNLKSIMGVMSLGVGKGAQV 61

Query: 62 XXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                          +EV +KEGLGE
Sbjct: 62 TIKAEGSDEAEALKGIEEV-IKEGLGE 87


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,063,502
Number of extensions: 116822
Number of successful extensions: 143
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 38,378,431
Length adjustment: 61
Effective length of query: 30
Effective length of database: 31,343,057
Effective search space: 940291710
Effective search space used: 940291710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)