BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0015.p
         (112 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_licA [G] COG1447 Phosphotransferase system cellobiose-specifi...    99   2e-21
lin2833 [G] COG1447 Phosphotransferase system cellobiose-specifi...    95   2e-20
BH0910 [G] COG1447 Phosphotransferase system cellobiose-specific...    94   6e-20
lin1830 [G] COG1447 Phosphotransferase system cellobiose-specifi...    93   1e-19
lin2457 [G] COG1447 Phosphotransferase system cellobiose-specifi...    85   3e-17

>BS_licA [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 110

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 66/92 (71%)

Query: 14  VMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQEEAGGTK 73
           +  +I   G  RS AMEAI  AK  +   A + L +A+++L  AH  QT+LIQ EAGG K
Sbjct: 9   IFQIILHGGNGRSSAMEAIAAAKSGDAEEARKKLQDAAEELSKAHHYQTELIQNEAGGEK 68

Query: 74  HEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
            E++LLM+HAQDHLMNAMTVKD+A EIIEL+E
Sbjct: 69  TEMTLLMVHAQDHLMNAMTVKDMAAEIIELYE 100


>lin2833 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 301

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 9/98 (9%), Positives = 22/98 (22%)

Query: 8   MEYIEKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQE 67
           M   +     IA  G         +     +  +  +         +   H         
Sbjct: 1   MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY 60

Query: 68  EAGGTKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
                 H      I+   +   + ++ D+   I  +  
Sbjct: 61  VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG 98


>BH0910 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 110

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MQSEGKLMEYIEKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKV 60
           M ++ K +E I     +I  SG ARS AME I +AK   +A A E ++ A ++   AH  
Sbjct: 1   MPTQQKPLEEI--AFQIILHSGNARSCAMEGIQLAKAGKFAAARERMEQADKEFHKAHHA 58

Query: 61  QTQLIQEEAGGTKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
           QT LIQ+EA G     SLL+IHAQDHLM +MT KDL  EIIELHE
Sbjct: 59  QTSLIQQEASGDAVSPSLLLIHAQDHLMTSMTTKDLCLEIIELHE 103


>lin1830 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 301

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 9/97 (9%), Positives = 22/97 (22%)

Query: 8   MEYIEKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQE 67
           M   +     IA  G         +     +  +  +         +   H         
Sbjct: 1   MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY 60

Query: 68  EAGGTKHEISLLMIHAQDHLMNAMTVKDLAKEIIELH 104
                 H      I+   +   + ++ D+   I  + 
Sbjct: 61  VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVE 97


>lin2457 [G] COG1447 Phosphotransferase system cellobiose-specific component
           IIA
          Length = 301

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 6/90 (6%), Positives = 21/90 (23%)

Query: 15  MSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQEEAGGTKH 74
             +         ++     +  QK    + +      + +    +   Q I  +  G   
Sbjct: 9   GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68

Query: 75  EISLLMIHAQDHLMNAMTVKDLAKEIIELH 104
           E    +    +   ++          +   
Sbjct: 69  EEKRAINRLMNKAASSSIGDVELVIFVVEG 98


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.313    0.124    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,764,740
Number of extensions: 190105
Number of successful extensions: 418
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 417
Number of HSP's successfully gapped: 21
Length of query: 112
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 33
Effective length of database: 29,267,045
Effective search space: 965812485
Effective search space used: 965812485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)