BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0035.p
         (202 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN0473 [K] COG1309 Transcriptional regulator                           79   4e-15
RSc0698 [K] COG1309 Transcriptional regulator                          53   3e-07
aq_2179 [K] COG1309 Transcriptional regulator                          50   3e-06
CAC0821 [K] COG1309 Transcriptional regulator                          49   5e-06
aq_321 [K] COG1309 Transcriptional regulator                           48   1e-05

>FN0473 [K] COG1309 Transcriptional regulator
          Length = 189

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 15/145 (10%)

Query: 2   QAKKDEVKRDIESAALKVFFRKGFADAKMNDIADEIQISVGNIYTYFKNKQELFYAVVPP 61
           Q  K+E+K  I  AA K+F+ KGF   KM DI++E +I VG +YTY+KNK+ELF  +V P
Sbjct: 3   QILKEEIKNRIYKAASKIFYEKGFLKTKMKDISEEAKIPVGLVYTYYKNKEELFDEIVNP 62

Query: 62  SLVDYLKNVLVESIRLDNQTFFDRAGSDKQSAIVQEQMNLLTQYSMQIVIIFEKNKGTVY 121
             + Y  N+ +E    +  +  +R  +  +  +++    LL Q+   +VI+ +K +GT +
Sbjct: 63  --IYYYLNLAIEKEEKEEGSALERFKATGEEYVLK----LLNQHK-SLVILMDKAQGTKH 115

Query: 122 SNAKNELIELMIETKKPFLKDHYKR 146
            NAK   I++        L++H KR
Sbjct: 116 ENAKQVFIKI--------LENHIKR 132


>RSc0698 [K] COG1309 Transcriptional regulator
          Length = 264

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 4  KKDEVKRDIESAALKVFFRKGFADAKMNDIADEIQISVGNIYTYFKNKQELFYAVVPPSL 63
          +K+   +++ +AA+ +F  +GFA  ++ D+A    +S G +Y YF NK ELF AVV  +L
Sbjct: 33 RKEARPQELVAAAMSLFVARGFAATRLEDVAAAAGVSKGTVYLYFANKVELFKAVVQENL 92

Query: 64 VDYL 67
          +  L
Sbjct: 93 LPVL 96


>aq_2179 [K] COG1309 Transcriptional regulator
          Length = 666

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 4/59 (6%), Positives = 9/59 (15%)

Query: 1  MQAKKDEVKRDIESAALKVFFRKGFADAKMNDIADEIQISVGNIYTYFKNKQELFYAVV 59
                      E   +K  F        +      +   +          +E      
Sbjct: 7  PYCGVGCGLYINEKGKVKGDFEHPANLGDICKKPLYLPKVLNRGRIAKPMYRENKSHSF 65


>CAC0821 [K] COG1309 Transcriptional regulator
          Length = 200

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 1  MQAKKDEVKRDIESAALKVFFRKGFADAKMNDIADEIQISVGNIYTYFKNKQELFYAVVP 60
          MQ  K+E+++ I   ALK F R G+ +A +  I      SVGN Y YF +K++L+  ++ 
Sbjct: 1  MQYLKEEMRKRIIDEALKEFLRLGYTNASVRTIVKNAGTSVGNFYKYFGSKEDLYEKIID 60

Query: 61 P---SLVDYL 67
          P    L+ YL
Sbjct: 61 PVYKKLIKYL 70


>aq_321 [K] COG1309 Transcriptional regulator
          Length = 198

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 10 RDIESAALKVFFRKGFADAKMNDIADEIQISVGNIYTYFKNKQEL 54
          R+I   A K+F +KG+ +  M DIA  + +SVGN+Y YF +K+EL
Sbjct: 13 REIMRVACKLFAQKGYHNTTMPDIAKALGMSVGNLYNYFSSKEEL 57


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,655,737
Number of extensions: 389648
Number of successful extensions: 913
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 8
Length of query: 202
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 101
Effective length of database: 26,729,697
Effective search space: 2699699397
Effective search space used: 2699699397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)