BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0029.p
         (122 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1899 [K] COG1733 Predicted transcriptional regulators              166   7e-42
lin0869 [K] COG1733 Predicted transcriptional regulators              133   5e-32
L133547 [K] COG1733 Predicted transcriptional regulators              131   2e-31
BS_ytcD [K] COG1733 Predicted transcriptional regulators              127   3e-30
BS_ykvN [K] COG1733 Predicted transcriptional regulators              117   5e-27

>lin1899 [K] COG1733 Predicted transcriptional regulators
          Length = 120

 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 92/114 (80%)

Query: 1   MKQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDG 60
           MK Y+LG+EATL+I+GGKWK LIIC L+ G KRT ELQR I  ISQKVL+QQLRELE DG
Sbjct: 1   MKVYNLGVEATLDIMGGKWKPLIICFLVQGTKRTGELQRCIPKISQKVLVQQLRELERDG 60

Query: 61  LVRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLE 114
           ++ R VY ++PPKVEYS+T YG+T N IVD MC WGKENI +R SQGE + L+E
Sbjct: 61  IIDRTVYNELPPKVEYSITAYGLTLNAIVDTMCQWGKENIALRNSQGEPVTLIE 114


>lin0869 [K] COG1733 Predicted transcriptional regulators
          Length = 117

 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 90/113 (79%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K Y++G+EATLE+IGGKWK +I+C L  G KRT EL+R I  I+QK+L QQLRELE+ G+
Sbjct: 3   KVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPNITQKMLTQQLRELEKSGV 62

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLE 114
           + R VY+Q+PPKVEYSL+EYG + ++I++ +C WG+ ++ +  ++ EDIVLL+
Sbjct: 63  IIRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVDLLLTKNEDIVLLK 115


>L133547 [K] COG1733 Predicted transcriptional regulators
          Length = 115

 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 86/113 (76%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K Y++G+EAT+++IGGKWK +I+C L     R  EL+R I GISQK+L QQLRELE D +
Sbjct: 3   KIYNIGVEATMDVIGGKWKPIILCNLRHNPSRPGELRRQIPGISQKMLTQQLRELEIDNI 62

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLE 114
           + R VY Q+PPKVEYSL+ YG T N ++DI+C+WG+ +++  +S GE++ +LE
Sbjct: 63  IVRKVYNQVPPKVEYSLSPYGETLNGLLDILCSWGEGHVQTLKSMGEEVQVLE 115


>BS_ytcD [K] COG1733 Predicted transcriptional regulators
          Length = 126

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 85/119 (71%), Gaps = 2/119 (1%)

Query: 2   KQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDGL 61
           K+Y++ +EATLE+IGGKWK +I+C L  G KRTSEL+R +  I+QK+L QQLRELE DG+
Sbjct: 4   KKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADGV 63

Query: 62  VRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGEDIVLLEDESPED 120
           + R VY Q+PPKVEY L+EYG +   I+D++C WG  +I   +  G+   +LE+    D
Sbjct: 64  INRIVYNQVPPKVEYELSEYGRSLEGILDMLCAWGANHIN--RVYGDTFSVLEESVLND 120


>BS_ykvN [K] COG1733 Predicted transcriptional regulators
          Length = 118

 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 74/108 (68%)

Query: 1   MKQYHLGIEATLEIIGGKWKALIICLLMSGAKRTSELQRNIHGISQKVLIQQLRELEEDG 60
           MK++  G E T E+IGGKWK L++  LM+G KRTSEL+R I  I+QK+LIQ LRELE  G
Sbjct: 1   MKKFSCGFEVTKEVIGGKWKGLVLYFLMNGPKRTSELKRIIPNITQKMLIQTLRELEASG 60

Query: 61  LVRRHVYQQMPPKVEYSLTEYGVTANKIVDIMCTWGKENIKMRQSQGE 108
           LV R +Y Q+PPKVEYS TE G +   I+  +C WG    +   ++GE
Sbjct: 61  LVSRKMYNQVPPKVEYSSTELGESLKPILQELCQWGGYYAEQEYAEGE 108


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,819,494
Number of extensions: 309182
Number of successful extensions: 792
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 76
Length of query: 122
Length of database: 38,378,431
Length adjustment: 88
Effective length of query: 34
Effective length of database: 28,229,039
Effective search space: 959787326
Effective search space used: 959787326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)