BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0025.p (407 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 100 4e-21 ML1770 [G] COG1653 ABC-type sugar transport system, periplasmic ... 97 4e-20 ML1427 [G] COG1653 ABC-type sugar transport system, periplasmic ... 87 5e-17 Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic... 86 8e-17 MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic ... 86 8e-17 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 167/387 (43%), Gaps = 35/387 (9%) Query: 6 KAIQRFEDKFPNIKVELQHIA-ADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGKFY 64 K ++ FE + P+IKV +Q IA DY TKL T +AG D PD + T AE+G Sbjct: 49 KMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETF-MQYAEKGVLA 107 Query: 65 NLQEFLDHDADISPDTLVPNIIYSLE-PGNVIGIGPGPESFGLFYNEDIFKEAGIAPPPS 123 +L +++ D D P TL + + G G+ + YN+D+F +AG+ P + Sbjct: 108 DLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTA 167 Query: 124 NVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNASTWWGVYSNFIYSNGG 183 + WTW + AKKLT N K +G + + NGG Sbjct: 168 D----WTWKDEEAAAKKLTDAKN--------------KVWGTSQPVTMNEFFKVAAQNGG 209 Query: 184 DFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQ-SKNIPATNVALQTKKVAMTI 242 D +N PE VEA+ +++ + V+PSP S +P ++AM Sbjct: 210 SIFDKDMTKTTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPED--LFMNGQIAMLH 267 Query: 243 DGQWASAGLAQSKFNFNVGVMPVLKEPVTTVVCAMFSIFKSTEHPQEAWELMKALVDPEA 302 G W + F ++V V K+ T + K ++ + A++ + + Sbjct: 268 TGIWLFDMFQDAPFKWDVQVEAGNKQKATHFFANGIGVSKDSDKKEAAFKFASFMSANKE 327 Query: 303 SIDMITAGTW-MPSLKDWYTDPALLAKWTENLEARPSGYKEAIVDVILTKGHQTPTGYVK 361 + + A W +P+ + + +L + L+A P +EA+ + + + VK Sbjct: 328 AAKIRIANNWELPATE----NKEILQPY---LDATPPDNREAVFESL---QYMVLPPVVK 377 Query: 362 NFNNIMDIVNPALDKVWLGQQSAQEAM 388 ++N I D N +KV G+ + ++A+ Sbjct: 378 DWNKISDYTNSEFEKVLNGESTPEKAL 404 >ML1770 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 446 Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 17/324 (5%) Query: 4 YKKAIQRFEDKFPNIKVELQHIA-ADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGK 62 Y ++ Q F P+I+V +A + Y L T VAG D+ + S +A A+ G+ Sbjct: 55 YSQSFQAFTRTHPDIEVHTNVVAYSKYFNTLRTDVAGGSADDIFWLSSAYLA-AYADNGR 113 Query: 63 FYNLQEFLDHDADISPDTLVPNIIYSLEPGNVIGIGPGPESFGL--FYNEDIFKEAGIAP 120 N+ L A + P ++ + P G+ FYN D+ AGI P Sbjct: 114 LINISNSLGQRATSDWE---PAVVDQFTRAGALWGVPQLTDAGIAVFYNADLLTAAGIDP 170 Query: 121 PPSNVADAWTW---DEFVETAKKLTVDTNGKTAADPDFDPRKIKQYGVNAST-WWGVYSN 176 N WT D +LT+DTNG A P FD R+++Q+G NA+ +Y N Sbjct: 171 VQLNRMQ-WTSNDDDTLRPLLTQLTLDTNGHVAKTPGFDSRRVRQWGYNAANDPQAIYLN 229 Query: 177 FIYSNGGDFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIP-ATNVALQT 235 +I S GG F D F + P AVEA + + L+N HV+P ++ N + + Sbjct: 230 YIGSAGGVFQRGD--EFAFDNPSAVEAFRYLVGLINNDHVAPPASETNNNGDFSRNQFLS 287 Query: 236 KKVAMTIDGQWASAGLA-QSKFNFNVGVMPVLKEPVTTVVCAMFSIFKS-TEHPQEAWEL 293 ++A+ G + A +A +++F++ + +MP + +V + S T+HP ++ Sbjct: 288 GRMALFQSGTYNLALIAREARFHWGIAMMPTGPQGRVSVTNGIAVAGNSATKHPDAVRQV 347 Query: 294 MKALVDPEASIDMITAGTWMPSLK 317 + + E + + G +P+++ Sbjct: 348 LAWMGSREGNAYLGRHGAAVPAVR 371 >ML1427 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 445 Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 40/335 (11%) Query: 6 KAIQRFEDKFPNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQGKFYN 65 + + F+ P+IKV +L+T AG PDV M T A LA++G + Sbjct: 53 RIVGEFQRDHPDIKVRAVLSGPGVMQQLSTFCAGGKCPDVLMAWDLTYA-ELADRGVLLD 111 Query: 66 LQEFLDHD----ADISPDTLVPNIIYSLEPGNVIGIGPGPESFG---LFYNEDIFKEAGI 118 L L D A++ D++ P +Y N G PE + LFYN+ +F AG+ Sbjct: 112 LNTLLGQDKAFAAELKSDSIEP--LYETFTFNG-GQYAFPEQWSGNYLFYNKQLFTNAGV 168 Query: 119 APPPSNVADAWTWDEFVETAKKLT-VDTNGKTAADPDFDPRKIKQYGVNASTWWGVYSN- 176 PPP W++ EF++TA+ LT D++G ++ Q+G +TW Y+ Sbjct: 169 QPPPCTWEQPWSFTEFLDTARALTKRDSSG-----------RVTQWGF-VNTWLSYYTAG 216 Query: 177 -FIYSNGGDFISADGKSFGLN--QPEAVEAIQKISDLMNVYHVSPSPVQSKNIPATNVAL 233 F +NG + + LN +EA+Q DL N Y V+P + + + AT Sbjct: 217 LFALNNGVPWSNPRMNPTHLNFDDDAFIEAVQFYCDLTNKYQVAPDASEQQWM-ATADLF 275 Query: 234 QTKKVAMTIDGQWASAGLAQSK-FNFNV---------GVMPVLKEPVTTVVCAM-FSIFK 282 K A+ + G W +++ +F+V G +P + + + A +I Sbjct: 276 SLGKAAIALGGHWRYQTFMRAEGLDFDVTSLPIGPSAGTVPATRSGACSDIGATGLAIAA 335 Query: 283 STEHPQEAWELMKALVDPEASIDMITAGTWMPSLK 317 S+ ++AWE +K P + + ++P L+ Sbjct: 336 SSSRKEQAWEFVKFATGPAGQALIGESCLFVPVLQ 370 >Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 37/335 (11%) Query: 1 VAPYKKAIQRFEDKFPNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQ 60 + P + + F+ ++P+IKV +L T AG PDV M T A LA++ Sbjct: 49 LRPRMRVVNEFQRRYPDIKVRALLSGPGVMQQLATFCAGGKCPDVLMAWELTYA-ELADR 107 Query: 61 GKFYNLQEFLDHD----ADISPDTLVPNIIYSLEPGNVIGIGPGPESFG---LFYNEDIF 113 G +L L D A++ D++ +Y N G PE + LFYN+ +F Sbjct: 108 GVLLDLNTLLARDQAFAAELKSDSI--GALYETFTFNG-GQYAFPEQWSGNFLFYNKQLF 164 Query: 114 KEAGIAPPPSNVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYG-VNASTWWG 172 +AG+ PPP + W++ EF++ A+ LT G++ D +Q+G VNA W Sbjct: 165 DDAGVPPPPGSWERPWSFAEFLDAAQALT--KQGRSGRD--------RQWGFVNA--WVS 212 Query: 173 VYSNFIYS-NGG---DFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIPA 228 Y+ +++ N G + + +EA+Q +DL N + V+PS + +++ Sbjct: 213 FYAAGLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADLTNKHKVAPSAAEQQSMST 272 Query: 229 TNVALQTKKVAMTIDGQWASAGLAQS-KFNFNVGVMPVLKEPVTTVVCA-----MFSIFK 282 ++ K + + G W ++ +F+V +P+ P C+ +I Sbjct: 273 ADL-FSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPI--GPRGRAACSDIGVTGLAIAA 329 Query: 283 STEHPQEAWELMKALVDPEASIDMITAGTWMPSLK 317 ++ +AWE +K P + + ++P L+ Sbjct: 330 TSRRKDQAWEFVKFATGPVGQALIGESRLFVPVLR 364 >MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 37/335 (11%) Query: 1 VAPYKKAIQRFEDKFPNIKVELQHIAADYDTKLTTMVAGNDVPDVAMMESGTIAFPLAEQ 60 + P + + F+ ++P+IKV +L T AG PDV M T A LA++ Sbjct: 49 LRPRMRVVNEFQRRYPDIKVRALLSGPGVMQQLATFCAGGKCPDVLMAWELTYA-ELADR 107 Query: 61 GKFYNLQEFLDHD----ADISPDTLVPNIIYSLEPGNVIGIGPGPESFG---LFYNEDIF 113 G +L L D A++ D++ +Y N G PE + LFYN+ +F Sbjct: 108 GVLLDLNTLLARDQAFAAELKSDSI--GALYETFTFNG-GQYAFPEQWSGNFLFYNKQLF 164 Query: 114 KEAGIAPPPSNVADAWTWDEFVETAKKLTVDTNGKTAADPDFDPRKIKQYG-VNASTWWG 172 +AG+ PPP + W++ EF++ A+ LT G++ D +Q+G VNA W Sbjct: 165 DDAGVPPPPGSWERPWSFAEFLDAAQALT--KQGRSGRD--------RQWGFVNA--WVS 212 Query: 173 VYSNFIYS-NGG---DFISADGKSFGLNQPEAVEAIQKISDLMNVYHVSPSPVQSKNIPA 228 Y+ +++ N G + + +EA+Q +DL N + V+PS + +++ Sbjct: 213 FYAAGLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADLTNKHKVAPSAAEQQSMST 272 Query: 229 TNVALQTKKVAMTIDGQWASAGLAQS-KFNFNVGVMPVLKEPVTTVVCA-----MFSIFK 282 ++ K + + G W ++ +F+V +P+ P C+ +I Sbjct: 273 ADL-FSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPI--GPRGRAACSDIGVTGLAIAA 329 Query: 283 STEHPQEAWELMKALVDPEASIDMITAGTWMPSLK 317 ++ +AWE +K P + + ++P L+ Sbjct: 330 TSRRKDQAWEFVKFATGPVGQALIGESRLFVPVLR 364 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,973,587 Number of extensions: 1320138 Number of successful extensions: 2499 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 2476 Number of HSP's successfully gapped: 30 Length of query: 407 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 298 Effective length of database: 25,807,025 Effective search space: 7690493450 Effective search space used: 7690493450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)