BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0024.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 219 5e-57 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 201 1e-51 BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 201 1e-51 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 199 6e-51 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 193 3e-49 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 113/290 (38%), Positives = 179/290 (61%), Gaps = 4/290 (1%) Query: 1 MRKGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGE 60 + K F+G LF AP I+GFA+F LGPM+ S+ +S TD++++ E +TG D+Y RLF Sbjct: 23 LNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPV-WTGADNYYRLFV-T 80 Query: 61 DELFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAM 120 D+LF +++ TFY L +P + +S +A+ LN VKG A+FRT +LP++ VA + Sbjct: 81 DDLFRKTVFNTFY-AALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITL 139 Query: 121 IWMWLLNPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWG-IGSTVIIFLAGLSG 179 +W W+ N D GL+N +L+ + + GWL E+ +P++++ +WG +G +I++LA L G Sbjct: 140 LWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQG 199 Query: 180 IPRQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNN 239 + YEA ++DGG + + H+T+P ++PT FF I + IG+ Q F I+T+GGPN Sbjct: 200 VNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNY 259 Query: 240 KSLFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYY 289 + V+YL+ FR +MGYASA+AW + +K WV+Y Sbjct: 260 STTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 170/289 (58%), Gaps = 4/289 (1%) Query: 2 RKGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGED 61 +K +F+ +F P +LGF +F P++ SL +S TD+++ FTG ++Y RLF+ D Sbjct: 7 KKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLV-STIHFTGFENYKRLFN--D 63 Query: 62 ELFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVPAVASAMI 121 F++S T F++ +P+V+IL A AL+LN +K R FR + +LP I VA +++ Sbjct: 64 PEFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLV 123 Query: 122 WMWLLNPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLW-GIGSTVIIFLAGLSGI 180 W WL NP GLIN LS + + WL ++ + +V++T+ W IG +++FL GL I Sbjct: 124 WKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNI 183 Query: 181 PRQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNK 240 YYEA +DG +L +TIP++TPT FF TI+++I SFQVF++ I+T+GGP+ Sbjct: 184 SPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGA 243 Query: 241 SLFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYY 289 ++ V ++ FR +MGYASA++W + K W Y Sbjct: 244 TMTLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 163/295 (55%), Gaps = 5/295 (1%) Query: 3 KGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGEDE 62 K F G +P +LGF +GPMIASL S TDY++ ++ GL +YI +F+ D Sbjct: 27 KESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLSS-ANWVGLQNYIHIFT-SDP 84 Query: 63 LFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVP-AVASAMI 121 F QSL T FV + P + + +A+L N KG +F TI Y+PSI+ +VA A++ Sbjct: 85 RFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRKGSGLFSTIYYIPSIIGGSVAVAVV 144 Query: 122 WMWLLNPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSGIP 181 W L G +NS L W+ S + + ++L +W GS +IIFLAGL IP Sbjct: 145 WKQLFGSR-GAVNSFLELFGFSGVNWIGSTDYALSILILLVVWQFGSPMIIFLAGLRQIP 203 Query: 182 RQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNNKS 241 ++ YEA VDG F + +T+PM+TP IFFN IM IG F F +AY++T GGP + + Sbjct: 204 QELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMTFTQAYLITGGGPLDST 263 Query: 242 LFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEG-GERS 295 LFY YL+ F MGYASA+AW ++S WV+YE G RS Sbjct: 264 LFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITFVFFKSSSYWVHYESEGGRS 318 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 118/298 (39%), Positives = 175/298 (58%), Gaps = 7/298 (2%) Query: 1 MRKGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGE 60 +RK G F +P I+GF FT+ PM ASL LS T Y++F + GLD++ +F+G Sbjct: 15 IRKDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAP-KWIGLDNFKEMFTG- 72 Query: 61 DELFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIVP-AVASA 119 DE ++QSL TF +V+ VP + + +A++LN KG AI+RT+ YLPSI+ +VA A Sbjct: 73 DEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLFYLPSIIGGSVAVA 132 Query: 120 MIWMWLLNPDLGLINSLLSRLHLPTS-GWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLS 178 ++W + D G+IN+LL + + W + S + +++L ++W GS+++IFLAGL Sbjct: 133 IMWRNIFGND-GVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQFGSSMLIFLAGLK 191 Query: 179 GIPRQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILT--QGG 236 IP Y EA VDG R +T+P++TP IFFN +M I +F F AYI++ +GG Sbjct: 192 NIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTFTPAYIISKGEGG 251 Query: 237 PNNKSLFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYYEGGER 294 P + +L Y YL++ F MGYASA+AW +TS WV+YE E Sbjct: 252 PLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSSYWVHYESKEE 309 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 7/299 (2%) Query: 1 MRKGMFYGLLFTAPAILGFAVFTLGPMIASLVLSLTDYNVFKEQTSFTGLDHYIRLFSGE 60 M + GL + +P I+G +FT P ++S LS T+Y++ + G+++Y R E Sbjct: 1 MNENRMLGLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPV-YNGIENY-RYMLTE 58 Query: 61 DELFYQSLGATFYFVVLRVPAVIILSFAVALLLNLNVKGRAIFRTIIYLPSIV-PAVASA 119 D+LF++S+G TF +V L +P + + +A +LN ++G FRT Y+PSI+ +VA A Sbjct: 59 DDLFWKSMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIA 118 Query: 120 MIWMWLLNPDLGLINSLLSRLHLPTSGWLYSEESVIPSVVLTTLWGIGSTVIIFLAGLSG 179 ++W L D GL+NS + WL + SV L +W GS ++IFLA L Sbjct: 119 VLWRALFAID-GLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQN 177 Query: 180 IPRQYYEAIEVDGGGWFHRLRHVTIPMVTPTIFFNTIMTIIGSFQVFNEAYILTQGGPNN 239 +P+ YEA +DG + VT+P++TP IFFN IM +FQ F Y++T GGP + Sbjct: 178 VPQSQYEAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTH 237 Query: 240 KSLFYVFYLWRTGFRDADMGYASALAWXXXXXXXXXXXXXXRTSKSWVYY---EGGERS 295 + + Y++ T F+ DMGY +ALAW ++SK WV+Y +GG+ Sbjct: 238 YTYLFSLYIYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADKGGKND 296 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,381,335 Number of extensions: 917084 Number of successful extensions: 4047 Number of sequences better than 1.0e-05: 159 Number of HSP's gapped: 3774 Number of HSP's successfully gapped: 160 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)