BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0023.p (256 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 216 2e-56 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 201 1e-51 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 198 6e-51 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 196 4e-50 lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 189 5e-48 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 112/257 (43%), Positives = 170/257 (66%), Gaps = 4/257 (1%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALP---FDTFFKNTLIIVVS 59 + P +W+V SSL S+IF+ IP+ F WSN+ FD +FKN+ II S Sbjct: 25 VYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTS 84 Query: 60 VLVGTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLY 119 V++G +++S+I A+GF+R+Q+K + +FA L+ ++MLP +T+IP ++ + LG+ +T Y Sbjct: 85 VVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFY 144 Query: 120 PLIIPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVA 179 PLI+PA+ GG F IFLL QF IPR+ DEAA +DG S + ++ R+I PL + A++ VA Sbjct: 145 PLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTVA 204 Query: 180 LFSFLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTA-QWDLLMAASATVVLPCVIVF 238 +F+F+ +W+DF+ PLIYL + T+ALGL+ F + + W L+A S +LP I+F Sbjct: 205 IFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFIIF 264 Query: 239 LAGQRYFLEGITLTGLK 255 L QRY +EGI+ TGLK Sbjct: 265 LFFQRYLVEGISTTGLK 281 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 161/254 (63%), Gaps = 3/254 (1%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLV 62 + P +W + SL ++ P P+ QWSN++ +PF F NT++ V Sbjct: 30 LFPIIWALSGSLKADGEV--TEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87 Query: 63 GTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLI 122 G V ++ + F+R+Q++GRDT+F + ++++M+P VT+IP F+ + +G+ DT + +I Sbjct: 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTPWAMI 147 Query: 123 IPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFS 182 +P FG F +L+RQF+ T+P D +EAA +DG S WQIY RI+ P SR AV+V+ + + Sbjct: 148 VPGLFGSA-FGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLT 206 Query: 183 FLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQ 242 ++ WNDF+ PL+ ++ +SL TL LGL +G Y A+W +LMAAS +++P VI++ Q Sbjct: 207 WVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQ 266 Query: 243 RYFLEGITLTGLKG 256 R F+ GI +TGL G Sbjct: 267 RSFVRGIAVTGLGG 280 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 159/252 (63%), Gaps = 3/252 (1%) Query: 5 PFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLVGT 64 P +W + SL ++ P P+ QWSN++ +PF F NT++ V G Sbjct: 32 PIIWALSGSLKADGEV--TEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 65 VITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLIIP 124 V ++ + F+R+Q++GRDT+F + ++++M+P VT+IP + + +G+ DT + +I+P Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149 Query: 125 AYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFSFL 184 FG F +L+RQF+ T+P D +EAA +DG S WQIY RI+ P SR AV+V+ + +++ Sbjct: 150 GLFGSA-FGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWV 208 Query: 185 ASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQRY 244 WNDF+ PL+ ++ +SL TL LGL +G Y A+W +LMAAS +++P VI++ QR Sbjct: 209 NVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRS 268 Query: 245 FLEGITLTGLKG 256 F+ GI +TGL G Sbjct: 269 FVRGIAVTGLGG 280 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 99/252 (39%), Positives = 156/252 (61%), Gaps = 3/252 (1%) Query: 5 PFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLVGT 64 P VW + SL +I P +PA QWSN+ +PF F NT++ V VG Sbjct: 35 PIVWALSGSLKKEGEI--REPTLLPAHPQWSNYTEVFDLIPFWRMFFNTVLYAGYVTVGQ 92 Query: 65 VITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLIIP 124 V ++ + F+R+Q++GRD +F + + ++M+P VT+IP F+ + LG+ DT + +I+P Sbjct: 93 VFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAMIVP 152 Query: 125 AYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFSFL 184 FG F +L+RQF+ T+P D +EAA +DG S WQIY R++ P ++ AV V+A+ +++ Sbjct: 153 GLFGSA-FGTYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWV 211 Query: 185 ASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQRY 244 WNDF+ PL+ ++ +SL TL LGL +G Y W ++MA S ++LP VI++ QR Sbjct: 212 NVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTCWPVIMATSMLIILPLVIIYTIAQRA 271 Query: 245 FLEGITLTGLKG 256 F+ GIT+T + G Sbjct: 272 FVRGITVTRIGG 283 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 156/253 (61%), Gaps = 3/253 (1%) Query: 3 IIPFVWLVRSSLMNLSQIFTMPPEWIPAPFQWSNFQRALTALPFDTFFKNTLIIVVSVLV 62 I+PF+W+V SSL ++I +PP P F NF + T + F + KNTLIIV Sbjct: 27 ILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFF 86 Query: 63 GTVITSTIGAFGFSRIQWKGRDTVFAILMTSMMLPAAVTMIPSFLGWQALGFYDTLYPLI 122 G + + G +GF++ ++KG++ +F +++ +MM+P VTMIP +L A G +T+ ++ Sbjct: 87 GLFLNAMAG-YGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIV 145 Query: 123 IPAYFGGGIFNIFLLRQFYLTIPRDFDEAAFVDGASYWQIYTRIIFPLSRSAVIVVALFS 182 +P G F IFL RQF TI D EAA +DGAS + I+ RI+ P+SR + V + + Sbjct: 146 LPGLVGA--FGIFLFRQFMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILT 203 Query: 183 FLASWNDFMGPLIYLKSDSLFTLALGLQMFQGSYTAQWDLLMAASATVVLPCVIVFLAGQ 242 F+A WN F+ PLI + +TL++GLQ+ +G Y + + L MA + +V+P +++F+ Q Sbjct: 204 FIAGWNSFLWPLIIANDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQ 263 Query: 243 RYFLEGITLTGLK 255 +Y L+G ++G+K Sbjct: 264 KYILKGFNVSGMK 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.332 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,770,058 Number of extensions: 712335 Number of successful extensions: 3187 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 2994 Number of HSP's successfully gapped: 160 Length of query: 256 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 152 Effective length of database: 26,383,695 Effective search space: 4010321640 Effective search space used: 4010321640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 114 (48.5 bits)