BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0020.p (313 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0736 [K] COG2207 AraC-type DNA-binding domain-containing prot... 74 3e-13 BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing pro... 69 7e-12 CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 69 7e-12 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 67 3e-11 slr1213_2 [K] COG2207 AraC-type DNA-binding domain-containing pr... 64 2e-10 >mll0736 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 288 Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 59/98 (60%) Query: 195 ISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRTRIEEACKQL 254 ++ A+ I + P+++ ++A S HF R F ++ G+ P FL +TR+ A QL Sbjct: 172 VAEAVRRIELDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQL 231 Query: 255 KSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWR 292 + +D ++ +I+ GF+ +S+FNR F R+MGE+P +R Sbjct: 232 RLSDDAVSAIAFDAGFNDLSTFNRRFRRVMGETPGDYR 269 >BH0401_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 141 Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 56/99 (56%) Query: 198 ALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRTRIEEACKQLKST 257 ++I +Y I +D++A HLS HF R F E+ G +P+ ++++ R+++A L ST Sbjct: 12 VFQYIETHYKDRIDLDTLANRSHLSKYHFSRLFKELTGDSPMAYVNKVRVQKAIPLLTST 71 Query: 258 DHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRKGAQ 296 ++L I+ GF S+S+FN F + +P RK + Sbjct: 72 KKTVLEIASLCGFDSVSTFNATFKKHYDLTPSYVRKNSN 110 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 119/284 (41%), Gaps = 23/284 (8%) Query: 16 LPIDFPVLLLSGERWKISDIRSEHLHFHNHLEIGICYSDSGIMEIKGEAVPFTAGDVTFI 75 + I F +L+GE +K H+H HL+I + + +E T G + I Sbjct: 19 VDIFFKDDILNGENFK--------RHWHEHLQIYYFTAGTAYLECAQNKFDVTTGSIAII 70 Query: 76 PRYLPHTTYSSPDTASLWS------YLFFSPEDLFQHSFKSAYSSFEPNLWAVTGKNCIL 129 H S + ++ +LF + EDL Q + + + L +T KN I Sbjct: 71 NSNELHYLESHSNNLKFYTIRIEPTFLFSNKEDLLQTKYLAPLA-----LNRITFKNLIE 125 Query: 130 NKEQYPKVYTLATSVVEELKQQKPYYQENAYGXXXXXXXXXXRIHSTNEMLAEQEAEHSL 189 N Q + ++++E + Y+ R + +++L E E E Sbjct: 126 NDLQ---ILECIKTILKEYSSKNIGYELAVKANIYQLIVYLLRGY-VDKILNENEFEERK 181 Query: 190 KGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRTRIEE 249 + I + Y +T++ +A + ST HF R F ++ G D+++ R+ + Sbjct: 182 RILNKFQCVFRLIEEKYTEKLTLNELADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYK 241 Query: 250 ACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWRK 293 + LK TD +I I+ + GF + + F+R F + +P ++RK Sbjct: 242 STNYLKQTDLNITEIAIKCGFDNNNYFSRLFKKHYDMTPTKYRK 285 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 115/271 (42%), Gaps = 23/271 (8%) Query: 33 SDIRSEHLHFHNHLEIGICYSDSGIMEIKGEAVPFTAGDVTFIPRYLPHTTYSSPDTASL 92 +++R H H+ LEI I + I +I+GE V GD+ + H + P + Sbjct: 22 NEVRVGENHHHDFLEISIICEGNVIYDIEGERVALEKGDMLIFNPGVNHYDITEPGMTNA 81 Query: 93 WSYLFFSPEDLFQHSFKSAYSSFEPNLWAVTGKNCILNKEQYPKVYTLATSVVEELKQQK 152 ++ F A + N + K + KE + +++ ++EE +K Sbjct: 82 QLHIGFR---------NFALEGYSRNTFPFK-KAFLRKKEDESAILSISKQIIEEKDAEK 131 Query: 153 PYYQENAYGXXXXXXXXXXRIHSTNEMLAEQEAEHSLK-------GDFVISPALEHITKN 205 P Y IH E EQ + +K +++ + ++ K+ Sbjct: 132 P-----GYDLILKAFVMQLIIHVLREATPEQLENNGVKLSTDEQQKQMLVNEIIHYMEKH 186 Query: 206 YMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDFLSRTRIEEACKQLKSTDHSILSIS 265 + +++ +++ ++S + + F E G +P+++L + R+ A + LK+ D ++ + Sbjct: 187 HTEDVSLSTLSQTMYISPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVTVKQAA 246 Query: 266 GQVGFHSISSFNRCFSRLMGESPKQ-WRKGA 295 VG++ F++ F + G P + WRK + Sbjct: 247 NMVGYNDAYYFSKLFKKYYGFPPSENWRKSS 277 >slr1213_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 116 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 62/111 (55%) Query: 182 EQEAEHSLKGDFVISPALEHITKNYMTPITIDSIAGLCHLSTTHFRRKFHEIMGVAPLDF 241 E++ + G + + P L++I ++ IT++ +AG +ST +F R F + MG +P F Sbjct: 4 EEDTLSTSTGHYRLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQKEMGCSPYQF 63 Query: 242 LSRTRIEEACKQLKSTDHSILSISGQVGFHSISSFNRCFSRLMGESPKQWR 292 + + R+E A L + SI ++ + GF S S N F L+G +PK++R Sbjct: 64 IIQQRVERAKAILLERELSISEVALRCGFSSHSQLNHHFRNLLGITPKEYR 114 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.133 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,254,791 Number of extensions: 845547 Number of successful extensions: 1458 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 1464 Number of HSP's successfully gapped: 51 Length of query: 313 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 207 Effective length of database: 26,153,027 Effective search space: 5413676589 Effective search space used: 5413676589 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)