BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0437.0004.p
         (199 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr7964 [I] COG0558 Phosphatidylglycerophosphate synthase              49   4e-06

>mlr7964 [I] COG0558 Phosphatidylglycerophosphate synthase
          Length = 185

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 55  YLICGASDVLDGYVARKTNSTSSLGASLDSVADXXXXXXXXXXXXXXXQLSLWVICWIAA 114
           ++I G SD +DG++AR+ N  S LGA LD +AD               QL LW++  + +
Sbjct: 34  FVIAGVSDGVDGFIARRFNQQSELGAYLDPMADKLLLVSVFVVMGFIGQLPLWLVVTMVS 93

Query: 115 IALIRLGSLLVGYVKYHAL---SFLHTYANKATGLAL 148
              + + ++L+  V  H +    FL + AN A  + L
Sbjct: 94  RDALIVCAVLLSTVMAHPVEIKPFLVSKANTAIQIVL 130


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,106,636
Number of extensions: 227686
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 98
Effective length of database: 26,729,697
Effective search space: 2619510306
Effective search space used: 2619510306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)