BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0437.0001.p (375 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value MA1603_2 [KL] COG1061 DNA or RNA helicases of superfamily II 290 2e-78 Cgl1126_2 [KL] COG1061 DNA or RNA helicases of superfamily II 263 3e-70 SA2277_2 [KL] COG1061 DNA or RNA helicases of superfamily II 262 6e-70 FN1974_2 [KL] COG1061 DNA or RNA helicases of superfamily II 253 3e-67 VC0812_2 [KL] COG1061 DNA or RNA helicases of superfamily II 166 5e-41 >MA1603_2 [KL] COG1061 DNA or RNA helicases of superfamily II Length = 618 Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 134/228 (58%), Positives = 177/228 (77%), Gaps = 2/228 (0%) Query: 121 VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHREQI 180 + PN+MQE ALQ L +LR A + +VISATGTGKTYLSAFDV++ P R LFVVHRE I Sbjct: 32 IKPNRMQESALQALADLRNQNAERAMVISATGTGKTYLSAFDVRTVNPRRFLFVVHRELI 91 Query: 181 LQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYILI 240 + A+ Y+R++ S ++SG +K DA Y+FA IQT+S+D L+ +PE FDYI+ Sbjct: 92 AKDAMDSYKRVIHNGKS-MDVMSGGNK-VDADYIFAMIQTLSKDEVLNQLSPEEFDYIVF 149 Query: 241 DEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEEDM 300 DEVH+AGA SY KV E+FKP+FLLGM+ATPERTD F+I+++FDYNIAYEIRLQ+A++E M Sbjct: 150 DEVHRAGAASYQKVFEYFKPRFLLGMSATPERTDGFDIFKMFDYNIAYEIRLQQAMKEKM 209 Query: 301 LCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIEYYGYSG 348 +CPFHYFG+++ +G++I+D S+L +DERV +IEKIEYYGYSG Sbjct: 210 ICPFHYFGISELTIDGEVIEDKAEFSKLTSDERVRNIIEKIEYYGYSG 257 >Cgl1126_2 [KL] COG1061 DNA or RNA helicases of superfamily II Length = 789 Score = 263 bits (672), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 122/233 (52%), Positives = 173/233 (74%), Gaps = 1/233 (0%) Query: 115 QTVSGLVSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFV 174 Q+ +G + PN MQE AL L L G +G++ISATGTGKT L+A + P R+LFV Sbjct: 24 QSNAGTIVPNVMQEEALDALLSLTEKGEKRGVIISATGTGKTILAALATRMLKPERVLFV 83 Query: 175 VHREQILQKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEA 234 VHREQIL KA +++ ++L DFG +SG++KE D ++F TIQT++++++LS +P Sbjct: 84 VHREQILDKARSEFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQISPTD 143 Query: 235 FDYILIDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQE 294 FD +++DEVH+AGA SYL ++ H +P+FLLG+TATPERTD FNIYELFD+N+ YEIRLQ Sbjct: 144 FDLVIVDEVHRAGAESYLALLNHLQPQFLLGLTATPERTDGFNIYELFDFNVPYEIRLQA 203 Query: 295 ALEEDMLCPFHYFGVTDFEYNGQ-IIDDTTLLSQLVTDERVSYLIEKIEYYGY 346 ALE +ML PFHY+GVTDF + + + DT+ LS LV++ERV +++E ++ YG+ Sbjct: 204 ALESNMLVPFHYYGVTDFTLDSETTVTDTSKLSALVSEERVHHILEALKTYGH 256 >SA2277_2 [KL] COG1061 DNA or RNA helicases of superfamily II Length = 242 Score = 262 bits (670), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 165/223 (73%), Gaps = 1/223 (0%) Query: 121 VSPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHREQI 180 + PN MQ AL++LK +R K L+ISATGTGKT L A DV+ P++ LF+VH E I Sbjct: 20 IVPNLMQAEALRSLKAIRDKTKDKALIISATGTGKTILCALDVREVNPNKFLFIVHNEGI 79 Query: 181 LQKALADYQRILG-GADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYIL 239 L +A +++++L DSDFG+L+G ++ DAKYLFATIQT+S+D + ++ FDYI+ Sbjct: 80 LNRAKEEFKKVLPIKNDSDFGLLTGKHRDVDAKYLFATIQTLSRDDNFKQFDENEFDYIV 139 Query: 240 IDEVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEED 299 DE H++ A +Y +V +FKPKF+LGMTATPER+D+ +I+ELFDYNIAYEIRLQ ALE D Sbjct: 140 FDEAHRSAASTYQRVFNYFKPKFMLGMTATPERSDELSIFELFDYNIAYEIRLQAALESD 199 Query: 300 MLCPFHYFGVTDFEYNGQIIDDTTLLSQLVTDERVSYLIEKIE 342 +LCPFHYFGVTD+ + G DD T L L +DERV+Y+I+K + Sbjct: 200 ILCPFHYFGVTDYVHQGIKEDDVTKLRYLTSDERVNYIIQKTD 242 >FN1974_2 [KL] COG1061 DNA or RNA helicases of superfamily II Length = 761 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 183/266 (68%), Gaps = 14/266 (5%) Query: 85 IELYQILYEEVQKVTRNDRLAMPFTPEKFPQTVSGLVSPNKMQERALQNLKELRTTGAVK 144 IE YQ YE+++K+ + + + PN MQ +AL+NL+E R + Sbjct: 1 IENYQKRYEQLKKLIEVNNQNLDLDE----------IKPNSMQVQALKNLEETRKEND-R 49 Query: 145 GLVISATGTGKTYLSAFDVKSFAPSRMLFVVHREQILQKALADYQRILGGADSDFGILSG 204 L+ISATGTGKTYLSAFDVK ++LFV HR+ IL+++ YQRIL + + I Sbjct: 50 ALLISATGTGKTYLSAFDVKQAKAKKILFVAHRKVILERSKISYQRILKNKNME--IFDN 107 Query: 205 NSKETDA-KYLFATIQTISQDSSLSNYNPEAFDYILIDEVHKAGARSYLKVIEHFKPKFL 263 N + D + +FA +QT++++ +L+ + + FDYI+IDEVH GA++Y + E+FKPKFL Sbjct: 108 NFQINDKDEVVFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGGAKTYQSIFEYFKPKFL 167 Query: 264 LGMTATPERTDDFNIYELFDYNIAYEIRLQEALEEDMLCPFHYFGVTDFEYNGQIIDDTT 323 LG+TATPERTDDFNIY+LF+YN+AYEIRLQ+A++E++LCPFHYFG++D +G+ ID+ T Sbjct: 168 LGITATPERTDDFNIYQLFNYNVAYEIRLQDAMKEELLCPFHYFGISDIVIDGESIDEKT 227 Query: 324 LLSQLVTDERVSYLIEKIEYYGYSGH 349 L +L +D RV +++E +YY YSG Sbjct: 228 SLKKLTSDTRVKHILENSKYYSYSGE 253 >VC0812_2 [KL] COG1061 DNA or RNA helicases of superfamily II Length = 790 Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 9/225 (4%) Query: 122 SPNKMQERALQNLKELRTTGAVKGLVISATGTGKTYLSAFDVKSFAPSRMLFVVHREQIL 181 +PN +Q AL L R G +GLV+ ATG GKT+L+AFD +++LFV HRE+IL Sbjct: 28 APNAVQVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEIL 87 Query: 182 QKALADYQRILGGADSDFGILSGNSKETDAKYLFATIQTISQDSSLSNYNPEAFDYILID 241 +A + +++ A + G+ +G ++ T A LFA++ TI + + L + + FDYI++D Sbjct: 88 LQAEKTFCQLIPNAKT--GLYNGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVD 145 Query: 242 EVHKAGARSYLKVIEHFKPKFLLGMTATPERTDDFNIYELFDYNIAYEIRLQEALEEDML 301 E H A ARSY ++ +FKPKFLLG+TATPER+D +I L D N+ +E L ++E +L Sbjct: 146 EFHHAAARSYRNLLTYFKPKFLLGLTATPERSDQADILSLCDSNLVFERNLVHGIDEKIL 205 Query: 302 CPFHYFGVTDFEYNGQII-------DDTTLLSQLVTDERVSYLIE 339 PF Y G+ D N Q I D +L + L T R ++ + Sbjct: 206 VPFDYHGIYDQAVNYQEIPWRNGKFDPDSLDNALATQRRAEHVYQ 250 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,070,913 Number of extensions: 1157367 Number of successful extensions: 2127 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 2122 Number of HSP's successfully gapped: 28 Length of query: 375 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 267 Effective length of database: 25,922,359 Effective search space: 6921269853 Effective search space used: 6921269853 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)