BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0434.0029.p (300 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sll0998 [K] COG0583 Transcriptional regulator 129 8e-30 CAC0023 [K] COG0583 Transcriptional regulator 118 1e-26 all3953 [K] COG0583 Transcriptional regulator 117 2e-26 sll0030 [K] COG0583 Transcriptional regulator 115 7e-26 all8086 [K] COG0583 Transcriptional regulator 114 2e-25 >sll0998 [K] COG0583 Transcriptional regulator Length = 345 Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 11/302 (3%) Query: 3 ISQLETLITISKTMSFRKAGELLNLTQPAVSAQIKSLEEEFKTQLVDRN-QPVTLTDRGQ 61 + QL L I+ SF++A + L ++QPAVS Q+++LE++ L DR + LT+ G Sbjct: 8 LDQLRILKAIASEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQLTEAGH 67 Query: 62 VFLTHAEQIVGLVEELKQRLADLDENPQGHIILGTTTSIAIQILPRILSYFQDQFPHIKT 121 + L + E+I+ L +E + + DL G +I+G + + +LPR++ F+ Q+P + Sbjct: 68 LLLNYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDVTV 127 Query: 122 XXXXXXXXQIYQHVENGLVDVGIGYLIGRSPG---MTTSVLYY--DTFELVVSPRHPLAQ 176 + V NG VD+ I + G P T +VL Y D L++ HPLAQ Sbjct: 128 QLQVHSTRRTAWGVANGQVDLAI--IGGEVPAELQETLTVLPYAEDELALILPVLHPLAQ 185 Query: 177 VKSAGIEALRNTPLILLSPDTVGRRFADEVFAKHGIQPQVI---MELTSSEEVKRMVELD 233 ++ E L I L + R+ D+V ++ I + + MEL S E +K V+ Sbjct: 186 AETIQKEDLYKLKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEAIKNAVQSG 245 Query: 234 LGAAVISKQSVTAEVRSGTLKIVPIIELEVTHPVGVITKSGKYVNSAMRQFLSDLKGMPE 293 LGAA +S ++ E+ L I PI +E+ + VI +Y + A F+ ++ Sbjct: 246 LGAAFVSTTAIEKELEMNVLHIAPIKNVEIRRVLSVIINPNRYRSKASAAFIREVLPQFS 305 Query: 294 TH 295 TH Sbjct: 306 TH 307 >CAC0023 [K] COG0583 Transcriptional regulator Length = 299 Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 146/293 (49%), Gaps = 15/293 (5%) Query: 1 MNISQLETLITISKTMSFRKAGELLNLTQPAVSAQIKSLEEEFKTQLVDR-NQPVTLTDR 59 M+ QL T I +SK SF +A LN Q V+ QIK LEEE + +L +R + VTLT Sbjct: 1 MDFKQLNTFIAVSKYQSFTEAAHSLNYAQSTVTTQIKILEEELQIKLFERIGKKVTLTYE 60 Query: 60 GQVFLTHAEQIVGLVEELKQRLADLDENPQGHIILGTTTSIAIQILPRILSYFQDQFPHI 119 G+ L +A+Q++ L E+K+ + D DE P G + +G S+ + LP IL ++ +P + Sbjct: 61 GKKLLPYAKQMIKLSNEIKKVVLD-DEKPSGTLTIGAAESLCVIRLPEILKEYRRLYPDV 119 Query: 120 KTXXXXXXXXQIYQHVENGLVDVG--IGYLIGRSPGMTTSVLYYDTFELVVSPRHPLAQV 177 + +++ ++DV +G I S + V + + L+ P HPL + Sbjct: 120 EVSLKFGSCADFRHFLKDNIIDVAFSLGTKID-SNEFISEVEFDEPMILLAYPDHPLVKK 178 Query: 178 KSAGIEALRNTPLILLSPDTVGRRFADEVFAKHGIQPQVIMELTSSEEVKRMVELDLGAA 237 + E + PL+L R + + + I+P++++E S + +K+ LG Sbjct: 179 EKIYPEDIVEEPLVLTEMGCSYRAAFENILRSYNIKPKLVLETGSVQAIKQFTMSRLGIT 238 Query: 238 VISKQSVTAEVRSGTLKIVPIIELEVTHP-VGVITK----SGKYVNSAMRQFL 285 ++ K +V E+++G L I L P G+I++ K+++ A+ FL Sbjct: 239 LLPKVAVEEEIKNGKL-----IPLNWCGPDFGIISQVLYHKDKWISPALNAFL 286 >all3953 [K] COG0583 Transcriptional regulator Length = 337 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 11/293 (3%) Query: 1 MNISQLETLITISKTMSFRKAGELLNLTQPAVSAQIKSLEEEFKTQLVDRN-QPVTLTDR 59 + QL L I+ SF++A + L ++QPAVS Q+++LE + L DR + LT+ Sbjct: 6 FTLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEA 65 Query: 60 GQVFLTHAEQIVGLVEELKQRLADLDENPQGHIILGTTTSIAIQILPRILSYFQDQFPHI 119 G + L++ E+I+ L +E + + DL G +I+G + + +LP+++ F+ ++P + Sbjct: 66 GHLLLSYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDV 125 Query: 120 KTXXXXXXXXQIYQHVENGLVDVGIGYLIGRSPGMTTSVLYY-----DTFELVVSPRHPL 174 + V NG VD+ I + G PG T L D L++ HP Sbjct: 126 AVQLHVHSTRRTAWSVANGQVDLAI--IGGEIPGELTESLEIIPYAEDELALILPVFHPF 183 Query: 175 AQVKSAGIEALRNTPLILLSPDTVGRRFADEVFAKHGIQP---QVIMELTSSEEVKRMVE 231 ++ + E L I L + R+ D+V ++ I ++ MEL S E +K V+ Sbjct: 184 TKLDTIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQ 243 Query: 232 LDLGAAVISKQSVTAEVRSGTLKIVPIIELEVTHPVGVITKSGKYVNSAMRQF 284 LGAA +S ++ E++ G L PI + + + +I +Y + A F Sbjct: 244 SGLGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAF 296 >sll0030 [K] COG0583 Transcriptional regulator Length = 304 Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/290 (29%), Positives = 151/290 (52%), Gaps = 8/290 (2%) Query: 3 ISQLETLITISKTMSFRKAGELLNLTQPAVSAQIKSLEEEFKTQLVDR-NQPVTLTDRGQ 61 + Q E I++T SF KA E L LTQP VS Q+K L + L ++ + + LT+ GQ Sbjct: 6 LHQFEVFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIYLTEAGQ 65 Query: 62 VFLTHAEQIVGLVEELKQRLADLDENPQGHIILGTTTSIAIQILPRILSYFQDQFPHIKT 121 L ++ I +++L++ +ADL +G++ L T T+ +PR+L F+ Q+P I Sbjct: 66 AVLDASKNITSCLDQLQEVIADLQGLKKGNLRLATITT-GKYFVPRLLGEFRQQYPGISI 124 Query: 122 XXXXXXXXQIYQHVENGLVDVGIGYLIGRSP-GMTTSVLYYDTFELVV--SPRHPLAQVK 178 QI + + N L D+ Y +G+ P + ++ ++ LVV S +HPL + K Sbjct: 125 SLQIGNRQQILERLANNLDDL---YFLGKPPSNLDINIRHFLENPLVVIASRQHPLVKEK 181 Query: 179 SAGIEALRNTPLILLSPDTVGRRFADEVFAKHGIQPQVIMELTSSEEVKRMVELDLGAAV 238 +E L N PLI+ + R +E F+++ ++ V ME++S+E +K+ V LG ++ Sbjct: 182 KISLERLVNEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGISI 241 Query: 239 ISKQSVTAEVRSGTLKIVPIIELEVTHPVGVITKSGKYVNSAMRQFLSDL 288 +S S+ E +G L ++ + + +I + K ++ + FL L Sbjct: 242 LSLYSLALEGINGPLAVLDVEGFPLQKHWYIIYQKSKQLSIVAQTFLDYL 291 >all8086 [K] COG0583 Transcriptional regulator Length = 300 Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/289 (29%), Positives = 137/289 (47%), Gaps = 10/289 (3%) Query: 1 MNISQLETLITISKTMSFRKAGELLNLTQPAVSAQIKSLEEEFKTQLVDRNQPVT-LTDR 59 MN +E+ + + T SFR+A + L ++QPAVS IK LE TQL+ R++ LT Sbjct: 1 MNFEYVESFLAVVHTGSFRQAAKQLGISQPAVSQHIKKLEASLNTQLIIRDRKGNQLTPA 60 Query: 60 GQVFLTHAEQIVGLVEELKQRLADLDENPQGHIILGTTTSIAIQILPRILSYFQDQFPH- 118 Q L +AE +V + + L +I+G +++I I +LP L Y +Q+ + Sbjct: 61 AQKLLPYAESLVLVTQRAISALKSTK------LIIGASSNIGIYLLPPYLKYHLEQYANS 114 Query: 119 IKTXXXXXXXXQIYQHVENGLVDVGIGYLIGRSPGMTTSVLYYDTFELVVSPRHPLAQVK 178 I +E GLVD+ + PG + + L+V P HP + Sbjct: 115 YAVDLVIDTNPAIADKLETGLVDIALMEWWDHRPGFIAQLWQNEELVLIVPPNHPWRNLT 174 Query: 179 SAGIEALRNTPLILLSPDTVGRRFADEVFAKHGIQPQVIMELTSSEEVKRMVELDLGAAV 238 L N ++ T RR F + + ++ MEL S+E VKR V+ LG ++ Sbjct: 175 KVPKAYLENIEMLGGEKGTGTRRLLQRFFGEQVHKMRISMELGSTEAVKRAVQAGLGVSI 234 Query: 239 ISKQSVTAEVRSGTLKIVPI--IELEVTHPVGVITKSGKYVNSAMRQFL 285 + +SVT EV+SG L+ + I + + VI +S ++S + QF+ Sbjct: 235 VLSKSVTQEVQSGLLRAISIDVDSKTLRKELFVIWRSSLSLDSPVHQFI 283 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,443,212 Number of extensions: 783409 Number of successful extensions: 6166 Number of sequences better than 1.0e-05: 1480 Number of HSP's gapped: 4731 Number of HSP's successfully gapped: 1480 Length of query: 300 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 194 Effective length of database: 26,153,027 Effective search space: 5073687238 Effective search space used: 5073687238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)