BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0434.0012.p
         (149 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0818 [K] COG0789 Predicted transcriptional regulators               93   2e-19
CAC3507 [K] COG0789 Predicted transcriptional regulators               86   2e-17
HI0186 [K] COG0789 Predicted transcriptional regulators                84   9e-17
L0247 [K] COG0789 Predicted transcriptional regulators                 83   2e-16
Cj1563c [K] COG0789 Predicted transcriptional regulators               82   4e-16

>lin0818 [K] COG0789 Predicted transcriptional regulators
          Length = 129

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 4/128 (3%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
            T+KEA+  TGL+ H +R+Y  +GL+P + R++NN R+FD ++++WL  + CL+ +GMP+
Sbjct: 3   QTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPL 62

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHRS 121
              K+ V+L   GD T+ +R A++ EH++    +  E  R    +E+K A Y+ +     
Sbjct: 63  AKQKEIVELTKCGDETVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEEL----E 118

Query: 122 PDTANPVN 129
            D    VN
Sbjct: 119 KDVKKSVN 126


>CAC3507 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 72/120 (60%), Gaps = 10/120 (8%)

Query: 3   TVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPIE 62
           ++KE A +TGL+EH +RFY  + L+ ++ R+EN  R++ +  I W+H +  +K +GMP+ 
Sbjct: 6   SIKEVAKLTGLSEHTLRFYEKQQLIKNISRDENGYRIYSDFDIEWIHFLIKVKNTGMPLN 65

Query: 63  VIKKYVDLCLEGDSTIPQRSALMMEHK----------EAALVKLEEAKRHVAHLEQKTAL 112
            ++KY +L  +G+ T+P+R  ++++H+          E  L K++E      HL Q+  L
Sbjct: 66  ELQKYSELMAQGNPTLPEREKMLLQHRKRVENEISDLEITLTKIDEKLDRYHHLMQELNL 125


>HI0186 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 68/113 (60%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +T  +AA   G++ + +RFY  +GL+P+V R+E   R F ++ + WL  ++CLK +GM +
Sbjct: 3   YTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSL 62

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQ 114
           + IK++ +  + GD TI +R +L     +    ++ E KR++  LE K A YQ
Sbjct: 63  KDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQ 115


>L0247 [K] COG0789 Predicted transcriptional regulators
          Length = 144

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 70/117 (59%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +T+ + +    ++  AVR+Y  +GL+P  +RN+   R F ++ + ++  + CLK+SG+PI
Sbjct: 4   YTIGDISRKLNVSNDAVRYYDKEGLLPFAKRNKAGRREFTDDDLGYIEVIDCLKKSGIPI 63

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILE 118
           + I +++D C+EGDST+ +R   M  H+E    K++  + ++A L  K   YQ   E
Sbjct: 64  KDIAQFIDWCMEGDSTLDERLDFMKTHEEQLEEKIKVLEMNLAFLRWKIWYYQTAAE 120


>Cj1563c [K] COG0789 Predicted transcriptional regulators
          Length = 143

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 1/126 (0%)

Query: 2   HTVKEAALITGLTEHAVRFYTDKGLVPSVQRNENNIRLFDEESINWLHGVKCLKQSGMPI 61
           +T+K+    T ++ H +RF+  KGL P VQ++EN+++ F +  I W+  ++ L+ SGMPI
Sbjct: 3   YTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKSDIEWVKWIEWLRISGMPI 62

Query: 62  EVIKKYVDLCLEGDSTIPQRSALMMEHKEAALVKLEEAKRHVAHLEQKTALYQAILEHRS 121
           E +K Y+ LC  G  T  +R  ++ + K+    +++  K     L +K  +Y+ +L +  
Sbjct: 63  EQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKESEKVLSKKIKIYEEMLANEV 122

Query: 122 PDTANP 127
            D  NP
Sbjct: 123 -DGFNP 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,762,242
Number of extensions: 402919
Number of successful extensions: 955
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 17
Length of query: 149
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 52
Effective length of database: 27,191,033
Effective search space: 1413933716
Effective search space used: 1413933716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)