BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0430.0004.p
         (151 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1537 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein...   167   7e-42
BS_spoIIAB [T] COG2172 Anti-sigma regulatory factor (Ser/Thr pro...   161   3e-40
BS_rsbW [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protei...    60   1e-09
TM1354_2 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr prote...    56   3e-08

>BH1537 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)
          Length = 146

 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/144 (56%), Positives = 102/144 (70%)

Query: 8   NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67
           N MN+ F+A S+NE             LDPTM+E+ ++KTVVSEAVTN IIHGY   P+G
Sbjct: 3   NEMNLSFSAQSQNESFARVTVGAFIAQLDPTMDEMTEIKTVVSEAVTNAIIHGYQGQPDG 62

Query: 68  IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127
           +V I ASI+     LTI D+G GI D+E A+QPLYT+KPELERSGMGFTIMENFMDE +V
Sbjct: 63  VVYIHASIDQGVFELTIRDEGMGISDVEEARQPLYTTKPELERSGMGFTIMENFMDEVKV 122

Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151
            SEP  GT++ +KK +   KA+ N
Sbjct: 123 VSEPMIGTTVFLKKHLTKSKAICN 146


>BS_spoIIAB [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)
          Length = 146

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/144 (55%), Positives = 103/144 (71%)

Query: 8   NFMNVQFAALSENEXXXXXXXXXXXXXLDPTMEELNDLKTVVSEAVTNCIIHGYDSDPEG 67
           N M+++F+ALS+NE             LDPTM+EL ++KTVVSEAVTN IIHGY+ + EG
Sbjct: 3   NEMHLEFSALSQNESFARVTVASFIAQLDPTMDELTEIKTVVSEAVTNAIIHGYEENCEG 62

Query: 68  IVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELERSGMGFTIMENFMDEFEV 127
            V IS ++E   V++TI D+G GI DLE A+QPL+T+KPELERSGMGFTIMENFMD+  +
Sbjct: 63  KVYISVTLEDHVVYMTIRDEGLGITDLEEARQPLFTTKPELERSGMGFTIMENFMDDVSI 122

Query: 128 TSEPGRGTSISMKKTIVSKKALYN 151
            S P  GT+I + K +   KAL N
Sbjct: 123 DSSPEMGTTIRLTKHLSKSKALCN 146


>BS_rsbW [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)
          Length = 160

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 38  TMEELNDLKTVVSEAVTNCIIHGYDSDPEGIVSISASIEHETVHLTIEDKGRGIEDLELA 97
           T +E+ DLK  VSEA TN + H Y  D  G VSI   +  + + + + D+G    D +  
Sbjct: 36  TYDEIEDLKIAVSEACTNAVQHAYKEDKNGEVSIRFGVFEDRLEVIVADEGDSF-DFDQK 94

Query: 98  QQPLYTSKP-----ELERSGMGFTIMENFMDEFEVTSEPGRGTSISMKKTI 143
           QQ L    P     +L   G+G  +ME  MDE  V +    G +++M K +
Sbjct: 95  QQDLGPYTPSHTVDQLSEGGLGLYLMETLMDEVRVQNHS--GVTVAMTKYL 143


>TM1354_2 [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase)
          Length = 181

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 10/94 (10%)

Query: 51  EAVTNCIIHGYDSDPEGIVSISASIEHETVHLTIEDKGRGIEDLELAQQPLYTSKPELER 110
           EA  N +IH   S+ +G   I   I++E + + +ED+G+GIE+LELA +  Y++ P+  R
Sbjct: 74  EAEANVVIH---SESDG--YIYCFIDNEKITVRVEDRGKGIENLELAMREGYSTAPDHIR 128

Query: 111 -----SGMGFTIMENFMDEFEVTSEPGRGTSISM 139
                +GMG   M+ + D+  + SE G+G  + M
Sbjct: 129 ELGFGAGMGLPNMKRYSDKMVIISEVGKGVIVEM 162


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.310    0.128    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,402,896
Number of extensions: 333400
Number of successful extensions: 605
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 7
Length of query: 151
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 54
Effective length of database: 27,191,033
Effective search space: 1468315782
Effective search space used: 1468315782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)