BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0430.0003.p
         (120 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1536 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist...   132   2e-31
BS_spoIIAA [T] COG1366 Anti-anti-sigma regulatory factor (antago...   118   2e-27
BS_rsbV [T] COG1366 Anti-anti-sigma regulatory factor (antagonis...    57   5e-09
CT765 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist ...    52   3e-07
CPn0909 [T] COG1366 Anti-anti-sigma regulatory factor (antagonis...    52   3e-07

>BH1536 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 10/116 (8%), Positives = 28/116 (24%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M     +      +    +             +M     +      I  LK+ +   +  
Sbjct: 1   MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
                 +   ++ +  + +V DA     R    + +         E      ++  
Sbjct: 61  HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFV 116


>BS_spoIIAA [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 10/116 (8%), Positives = 28/116 (24%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M     +      +    +             +M     +      I  LK+ +   +  
Sbjct: 1   MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACF 60

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDLEVA 119
                 +   ++ +  + +V DA     R    + +         E      ++  
Sbjct: 61  HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFV 116


>BS_rsbV [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 7/102 (6%), Positives = 18/102 (17%), Gaps = 2/102 (1%)

Query: 4   MNSHVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSG 63
           M     +      +    +             +M    + GQ   L       +  +   
Sbjct: 1   MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEM--ICLEGQQAGLSWITVLKKRENYRA 58

Query: 64  LGVILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPL 105
                   K+   +   +        + R             
Sbjct: 59  CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNAR 100


>CT765 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 6/105 (5%), Positives = 20/105 (19%), Gaps = 1/105 (0%)

Query: 12  HHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSGLGVILGRY 71
             +  L +              +   +   + GQ    +  +  L+  ++          
Sbjct: 7   VSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQ-AGLSWITVLKKRENYRACFHQFDP 65

Query: 72  KLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDL 116
             + +   + V                   I           +  
Sbjct: 66  VKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGE 110


>CPn0909 [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of
           anti-sigma factor)
          Length = 187

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 6/110 (5%), Positives = 20/110 (18%), Gaps = 1/110 (0%)

Query: 7   HVEMEHHRGVLIVRLSGELDHHAAEYVRMDMDEAIMRGQVEHLILSLKELQFMDSSGLGV 66
                  +  L +              +   +   + GQ    +  +  L+  ++     
Sbjct: 2   ERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQA-GLSWITVLKKRENYRACF 60

Query: 67  ILGRYKLIRSKGGKMVVCDAAPPVQRLLEMSGLFKIMPLYDDESAALSDL 116
                  + +   + V                   I           +  
Sbjct: 61  HQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGE 110


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,137,718
Number of extensions: 337842
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 38,378,431
Length adjustment: 86
Effective length of query: 34
Effective length of database: 28,459,707
Effective search space: 967630038
Effective search space used: 967630038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)