BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0427.0015.p
         (79 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

asr1309 [O] COG0694 Thioredoxin-like proteins and domains              62   2e-10
all1456_2 [O] COG0694 Thioredoxin-like proteins and domains            47   9e-06

>asr1309 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 111

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 5/51 (9%), Positives = 11/51 (21%)

Query: 8  FDEVSEVLLKLRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLK 58
           + ++   +         G  +     E               P+ T   K
Sbjct: 5  IEGMTMKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTHHK 55


>all1456_2 [O] COG0694 Thioredoxin-like proteins and domains
          Length = 117

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 18 LRPFLLRDGGDAELVEVENGVAKLRFLGACNGCPSATITLK 58
          +RP L+ DGGD EL +V+  + K+   GAC  C S+T TLK
Sbjct: 57 VRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLK 97


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.141    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,381,327
Number of extensions: 173992
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 3
Length of query: 79
Length of database: 38,378,431
Length adjustment: 50
Effective length of query: 29
Effective length of database: 32,611,731
Effective search space: 945740199
Effective search space used: 945740199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)