BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0012.p (455 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3467 [O] COG0719 ABC-type transport system involved in Fe-S cl... 689 0.0 BS_yurU [O] COG0719 ABC-type transport system involved in Fe-S c... 662 0.0 SA0778 [O] COG0719 ABC-type transport system involved in Fe-S cl... 649 0.0 lin2506 [O] COG0719 ABC-type transport system involved in Fe-S c... 645 0.0 L29491 [O] COG0719 ABC-type transport system involved in Fe-S cl... 585 e-167 >BH3467 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/430 (73%), Positives = 375/430 (87%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK P++G+YKYGF D S+F+S +GLT EIV EISR+K+EP+WML+FRLK+LEQFYK Sbjct: 1 MAKKMPEIGEYKYGFSDRDVSIFRSKRGLTREIVEEISRMKQEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL L+ +DI YYV+PSEK ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLTELDFDDITYYVKPSEKSERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLEE G++F DTD+ALK+ ++FKEYFGTIIPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEELGIIFKDTDSALKENEDIFKEYFGTIIPPTDNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGV+ E P+Q YFRINSENMGQFERTLIIADE S +HYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKGVKTETPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII +KD+ RYTTIQNWAPN+YNLVT+RAVA ENATMEW+DGNIGSK+TMKYP Sbjct: 241 LHSAVVEIIVKKDAYCRYTTIQNWAPNVYNLVTKRAVAYENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 AV++KG GAKG+ILSIA+AGK QHQDAGAKV+HLAP+ QGGKVSYRG++ Sbjct: 301 AVIMKGEGAKGTILSIAIAGKGQHQDAGAKVLHLAPNCSSTIVSKSISKQGGKVSYRGIA 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F R S GSKS I+CDTLI+DN STSDT+PYNEI N+ ITLEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSQGSKSKIECDTLIMDNESTSDTIPYNEILNNDITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++EEEAT+ Sbjct: 421 RGISEEEATE 430 >BS_yurU [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 301/430 (70%), Positives = 363/430 (84%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK PD+G+YKYGF D S+F+S +GLT EIV EISR+KEEP+WML+FRLK+LE FY Sbjct: 1 MAKKMPDIGEYKYGFHDKDVSIFRSERGLTKEIVEEISRMKEEPQWMLDFRLKSLEHFYN 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL+ LN ++I YYV+PSE+ ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLNSLNFDEITYYVKPSERSERSWDEVPEEIKQTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M++DLE QG+VF DTD+ALK+ ++F+E++ +IPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEAQGIVFKDTDSALKENEDIFREHWAKVIPPTDNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPKGV+ E P+Q YFRINSENMGQFERTLII DE + +HYVEGCTAP+Y+T+S Sbjct: 181 SGGSFIYVPKGVKVETPLQAYFRINSENMGQFERTLIIVDEEASVHYVEGCTAPVYTTNS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII +K RYTTIQNWA N+YNLVT+R V EENATMEW+DGNIGSK+TMKYP Sbjct: 241 LHSAVVEIIVKKGGYCRYTTIQNWANNVYNLVTKRTVCEENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 A +LKG GA+G LSIA+AGK QHQDAGAK+IHLAP+ QGGKV+YRG+ Sbjct: 301 ACILKGEGARGMTLSIALAGKGQHQDAGAKMIHLAPNTSSTIVSKSISKQGGKVTYRGIV 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F R + G++SNI+CDTLI+DN STSDT+PYNEI ND I+LEHEA VSKVSEEQLFYLMS Sbjct: 361 HFGRKAEGARSNIECDTLIMDNKSTSDTIPYNEILNDNISLEHEAKVSKVSEEQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++EEEAT+ Sbjct: 421 RGISEEEATE 430 >SA0778 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 465 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 299/430 (69%), Positives = 357/430 (83%) Query: 1 MAKNAPDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYK 60 MAK APD+GDYKYGF D S+F+S +GLT IVREIS +K EPEWML+FRLK+L+ FYK Sbjct: 1 MAKKAPDVGDYKYGFHDDDVSIFRSERGLTENIVREISNMKNEPEWMLDFRLKSLKLFYK 60 Query: 61 MPMPRWGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVS 120 MPMP+WG DL LN +DI YYV+PSE+ ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLSELNFDDITYYVKPSEQAERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M ++LEE+G++F DTD+AL++ ELFK+YF +++P ADNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMEKELEEKGIIFKDTDSALQENEELFKKYFASVVPAADNKFAALNSAVW 180 Query: 181 SGGSFVYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSS 240 SGGSF+YVPK ++ + P+Q YFRINSENMGQFERTLIIADEG+ +HYVEGCTAP+Y+TSS Sbjct: 181 SGGSFIYVPKNIKLDTPLQAYFRINSENMGQFERTLIIADEGASVHYVEGCTAPVYTTSS 240 Query: 241 LHSGVIEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYP 300 LHS V+EII KD+ VRYTTIQNWA N+YNLVT+R EN MEWVDGN+GSK+TMKYP Sbjct: 241 LHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVYENGNMEWVDGNLGSKLTMKYP 300 Query: 301 AVLLKGRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLS 360 +L G GAKGS LSIA AGK Q QDAGAK+IH AP+ GGKV YRG+ Sbjct: 301 NCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIV 360 Query: 361 SFSRNSAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMS 420 F R + G++SNI+CDTLILDN STSDT+PYNE+ NDQI+LEHEA VSKVSEEQLFYLMS Sbjct: 361 HFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDQISLEHEAKVSKVSEEQLFYLMS 420 Query: 421 RGLTEEEATQ 430 RG++EEEAT+ Sbjct: 421 RGISEEEATE 430 >lin2506 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 464 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 294/425 (69%), Positives = 356/425 (83%) Query: 6 PDMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYKMPMPR 65 P++G+Y+YGF D SVF++ +GLT ++VREIS IKEEPEWMLEFRLK+LEQFYKMPMP Sbjct: 5 PEIGEYQYGFHDKDTSVFRTERGLTEKVVREISNIKEEPEWMLEFRLKSLEQFYKMPMPT 64 Query: 66 WGADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVSAQYES 125 WG DL L EDI YYV+PSE+ ++W+EVP EIK TFDKLGIPEAEQK+LAG SAQYES Sbjct: 65 WGGDLSELKFEDITYYVKPSEQTVRSWDEVPEEIKRTFDKLGIPEAEQKYLAGASAQYES 124 Query: 126 EVVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVWSGGSF 185 EVVYH+M+QDLE+ G+VF DTD+ALK+ ++FKEYF +IPP+DNKFAALNSAVWSGGSF Sbjct: 125 EVVYHNMKQDLEDLGIVFKDTDSALKENEDIFKEYFAKVIPPSDNKFAALNSAVWSGGSF 184 Query: 186 VYVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSSLHSGV 245 +YVP G++ + P+Q YFRINSENMGQFERTLII DE + ++YVEGCTAP+Y+T+SLHS V Sbjct: 185 IYVPPGIKVDTPLQAYFRINSENMGQFERTLIIVDENASVNYVEGCTAPVYTTNSLHSAV 244 Query: 246 IEIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYPAVLLK 305 +EII + + RYTTIQNWA N+YNLVT+R EENATMEW+DGNIGSK+TMKYPAV L+ Sbjct: 245 VEIIVKPGAYCRYTTIQNWANNVYNLVTKRTFCEENATMEWIDGNIGSKLTMKYPAVHLR 304 Query: 306 GRGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLSSFSRN 365 G GA+G+ LSIA+AGK Q QDAGAK++H AP+ QGG V+YRG+ F RN Sbjct: 305 GEGARGTTLSIAIAGKGQRQDAGAKMMHYAPNTSSTIVSKSISKQGGNVTYRGIVHFGRN 364 Query: 366 SAGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMSRGLTE 425 + G++SNI+CDTLI+DNLSTSDT+PYNEI N I+LEHEA VSKVSEEQLFYLMSRGL+E Sbjct: 365 ADGARSNIECDTLIMDNLSTSDTIPYNEILNSNISLEHEAKVSKVSEEQLFYLMSRGLSE 424 Query: 426 EEATQ 430 EEAT+ Sbjct: 425 EEATE 429 >L29491 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 311 Score = 585 bits (1508), Expect = e-167, Method: Compositional matrix adjust. Identities = 0/423 (0%), Positives = 0/423 (0%) Query: 7 DMGDYKYGFRDGHQSVFQSGKGLTPEIVREISRIKEEPEWMLEFRLKALEQFYKMPMPRW 66 + + K +V L + + + + K+ + Sbjct: 12 SLKNLKRNGWMTVAAVSSVTITLVLVGLFLSVILNTSKISNGIENNVRIVAYMKLDVHDQ 71 Query: 67 GADLDGLNLEDIQYYVRPSEKQGKTWEEVPAEIKATFDKLGIPEAEQKFLAGVSAQYESE 126 + K + ++VP F E G + Sbjct: 72 ETKIQDPKDNKKTINNPDHLKIYDSIKKVPNVKTVEFSSKEAQLKELTKALGNNWNLFKG 131 Query: 127 VVYHSMRQDLEEQGVVFLDTDTALKQYPELFKEYFGTIIPPADNKFAALNSAVWSGGSFV 186 + E K E F G + Sbjct: 132 DANPLYDAYIVEADKPANVKSVTSKISKLSGIEKATYGGANTAKLFQIAQGIRTWGTAAA 191 Query: 187 YVPKGVQCEVPIQGYFRINSENMGQFERTLIIADEGSFIHYVEGCTAPIYSTSSLHSGVI 246 + V + + + ++ + +I + + Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPGL 251 Query: 247 EIICRKDSRVRYTTIQNWAPNIYNLVTQRAVAEENATMEWVDGNIGSKVTMKYPAVLLKG 306 + T + + + + M + IGS + LK Sbjct: 252 IVAWAYRLAFVSLTPSLQSQKLAMFAPKEFIPAIVGLMAVIGILIGSFGALLSMRRFLKI 311 Query: 307 RGAKGSILSIAVAGKEQHQDAGAKVIHLAPDXXXXXXXXXXXXQGGKVSYRGLSSFSRNS 366 Sbjct: 312 371 Query: 367 AGSKSNIKCDTLILDNLSTSDTVPYNEIKNDQITLEHEATVSKVSEEQLFYLMSRGLTEE 426 Sbjct: 372 431 Query: 427 EAT 429 Sbjct: 432 434 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,980,507 Number of extensions: 1315559 Number of successful extensions: 2306 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 2190 Number of HSP's successfully gapped: 75 Length of query: 455 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 345 Effective length of database: 25,691,691 Effective search space: 8863633395 Effective search space used: 8863633395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)