BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0427.0011.p (440 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3470 [O] COG0719 ABC-type transport system involved in Fe-S cl... 392 e-109 BS_yurX [O] COG0719 ABC-type transport system involved in Fe-S c... 362 e-100 lin2509 [O] COG0719 ABC-type transport system involved in Fe-S c... 334 1e-91 SA0775 [O] COG0719 ABC-type transport system involved in Fe-S cl... 328 1e-89 SP0868 [O] COG0719 ABC-type transport system involved in Fe-S cl... 300 3e-81 >BH3470 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 435 Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust. Identities = 207/435 (47%), Positives = 298/435 (68%), Gaps = 8/435 (1%) Query: 3 VQNRVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDY 62 V+ +++++ + + ++S A+ EPQW + RL+ + E L+LP+ +K K+ W+ + + D+ Sbjct: 3 VETKLTIDKEYVQSFSDARNEPQWFKDIRLKGFELVETLELPKPDKTKITSWN-FTNFDH 61 Query: 63 KAENMWP--GLQEAHEAVHSLVNFPVEG-GLIVQHNSDVVYSELSADLAAQGVILTDLHT 119 K + P + E + V L+ + L+VQ ++ VVYS+L L A+GVI TDL T Sbjct: 62 KLPEVSPVASIDELRDEVKGLIGEASDTQNLLVQRDATVVYSKLDEALKAKGVIFTDLLT 121 Query: 120 AAREHGELVQRY-LGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMS 178 A +EHG+LV++Y + AVK +E+ L+A+H+A+ +GG F+Y+P VE+EVPLQ++F+ Sbjct: 122 AVKEHGDLVEKYYMKDAVKVDENRLTALHAALVNGGTFIYVPRNVEIEVPLQSVFWFDTE 181 Query: 179 GARFAPHILIVAGNNSKISYVDNCIS-GREDIKVLHNGVLEVFAGAGSKVQVASVHQLAA 237 A H++IVA +NS I+YV+N S G E+ + N V+EVFAGA +KV +V LAA Sbjct: 182 KAGLFNHVIIVAEDNSSITYVENYASFGSEE--AVANIVVEVFAGANAKVSFGAVDNLAA 239 Query: 238 PTTDFTQRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLS 297 T + RRA V D VEW +G+MN+G T S+ T L G+ S +D K ++VG G QK + Sbjct: 240 GVTTYVVRRAHVGRDSRVEWALGQMNDGNTVSENTTHLLGDNSWADTKTVSVGRGEQKQN 299 Query: 298 YTTQAQHFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARG 357 +TTQ H G+ S ++ VMRE AT+I NGI+KIE GAT G+QTER+LMLS KARG Sbjct: 300 FTTQIFHHGKHSEGYILKHGVMREAATSIFNGISKIEHGATKSHGEQTERVLMLSEKARG 359 Query: 358 DANPILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPL 417 DANPILLIDEDDVTAGHAASVG+++ Q++YLMSRGISR EAE LVI GFLAPV+ ++P+ Sbjct: 360 DANPILLIDEDDVTAGHAASVGKIDPIQMFYLMSRGISRAEAERLVIHGFLAPVVGQLPI 419 Query: 418 EGVRSRLQDLVESKL 432 E V+ RL + +E K+ Sbjct: 420 ESVKERLVEAIERKV 434 >BS_yurX [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 437 Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust. Identities = 187/431 (43%), Positives = 277/431 (64%), Gaps = 4/431 (0%) Query: 6 RVSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDYKAE 65 ++SV+ + L ++S EP WL RLQAL+QAE+L +P+ +K K+ W+ + + Sbjct: 6 KLSVDQEYLKSFSEKHQEPAWLKNLRLQALEQAEDLPMPKPDKTKITNWNFTNFAKHTVD 65 Query: 66 N-MWPGLQEAHEAVHSLVNFPVEGG-LIVQHNSDVVYSELSADLAAQGVILTDLHTAARE 123 N L++ + V +L++ E L VQ + + LS +L +GVI TD+ TAARE Sbjct: 66 NEPLSSLEDLTDEVKALIDIENEDKTLYVQRDQTPAHLSLSQELKDKGVIFTDILTAARE 125 Query: 124 HGELVQRY-LGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSGARF 182 H +LV++Y + VK +EH L+A+H+A+ +GG FLY+P V+VE P+QA++ + Sbjct: 126 HSDLVEKYFMKDGVKVDEHKLTALHAALVNGGAFLYVPKNVQVETPVQAVYVHESNDTAL 185 Query: 183 APHILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTTDF 242 H+LIVA ++S ++YV+N IS + N + EV G + V +V L++ T + Sbjct: 186 FNHVLIVAEDHSSVTYVENYISTVNPKDAVFNIISEVITGDNASVTYGAVDNLSSGVTTY 245 Query: 243 TQRRAVVLA-DGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTTQ 301 RR D +EW +G MN+G T S+ T L G+G+ D K + VG G Q ++TTQ Sbjct: 246 VNRRGAARGRDSKIEWALGLMNDGDTISENTTNLYGDGTYGDTKTVVVGRGEQTENFTTQ 305 Query: 302 AQHFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDANP 361 HFG++S ++ VM++ A++I NGI KIE GA+ + +Q R+LMLS KARGDANP Sbjct: 306 IIHFGKASEGYILKHGVMKDSASSIFNGIGKIEHGASKANAEQESRVLMLSEKARGDANP 365 Query: 362 ILLIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGVR 421 ILLIDEDDVTAGHAASVG+V+ Q+YYLMSRGI + EAE LVI+GFLAPV++E+P+EGV+ Sbjct: 366 ILLIDEDDVTAGHAASVGRVDPIQLYYLMSRGIPKEEAERLVIYGFLAPVVNELPIEGVK 425 Query: 422 SRLQDLVESKL 432 +L ++E K+ Sbjct: 426 KQLVSVIERKV 436 >lin2509 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 433 Score = 334 bits (857), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 174/428 (40%), Positives = 265/428 (61%), Gaps = 2/428 (0%) Query: 7 VSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDYKAEN 66 +++ D + A+S EP W L+ R A K L LP V+K K+ RW+ + + Sbjct: 5 MTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETFIPFK 64 Query: 67 MWPGLQEAHEAVHSLVNFP-VEGGLIVQHNSDVVYSELSADLAAQGVILTDLHTAAREHG 125 + E V +LV+ E VQ + +L +L QGVI TD+ +A + H Sbjct: 65 EGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAVKNHP 124 Query: 126 ELVQRY-LGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSGARFAP 184 ELV++Y + AV+ E+ L+A H+A+ +GG+FLY+P VEV+ P+QA+F + + Sbjct: 125 ELVKKYFMTDAVQVNENKLTAFHAALVNGGIFLYVPKNVEVKAPIQAVFVQEKAESPLVN 184 Query: 185 HILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTTDFTQ 244 H+L+VA +NS ++YV+N ++ K + + V EV A +++ V LA+ T + Sbjct: 185 HVLLVADDNSAVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASGVTTYVN 244 Query: 245 RRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTTQAQH 304 RR + D +EW +G MN+G T ++ T L G+GS++D K + VG G Q + TT+ H Sbjct: 245 RRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTTRVTH 304 Query: 305 FGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDANPILL 364 +G++S +++ VM+E AT I NGI I+ GA+ D QQ R+LMLSP+ARGDANPILL Sbjct: 305 YGKASNGTILSHGVMKERATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDANPILL 364 Query: 365 IDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGVRSRL 424 IDE+DV AGHAASVG+V+ Q++YLMSRGIS+ EAE LVI GFL PV+ ++P+E V++ L Sbjct: 365 IDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAERLVIHGFLDPVVRQLPIESVKTML 424 Query: 425 QDLVESKL 432 ++++E K+ Sbjct: 425 REVIEGKV 432 >SA0775 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 435 Score = 328 bits (840), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 168/431 (38%), Positives = 267/431 (61%), Gaps = 4/431 (0%) Query: 7 VSVNADDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDI--YEHGDYKA 64 ++++ + L +S+A EP W+ E R +ALK E L++P+ +K KL +WD ++ D K Sbjct: 6 LNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKG 65 Query: 65 ENMWPGLQEAHEAVHSLVNFPVEGGLIVQHNSDVVYSELSADLAAQGVILTDLHTAAREH 124 + ++ L + E+V +++ L++QHN+ + Y+++ + + GVI+ L A H Sbjct: 66 D-VYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNH 124 Query: 125 GELVQR-YLGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFYSSMSGARFA 183 +LVQ+ ++ AV +EH ++A+H+A+ +GGVF+Y+P V VE P+Q + A F Sbjct: 125 SDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFY 184 Query: 184 PHILIVAGNNSKISYVDNCISGREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTTDFT 243 H++IV +++++YV+N +S N + EV AGA S + SV + T Sbjct: 185 NHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHI 244 Query: 244 QRRAVVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTTQAQ 303 RR + AD ++ W +G MN G D T L G+ STS K + VG+G QK++ T++ Sbjct: 245 IRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIV 304 Query: 304 HFGRSSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDANPIL 363 +G+ + ++ VM+E A+++ NGI I+ G T Q R+LMLS ARGDANPIL Sbjct: 305 QYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPIL 364 Query: 364 LIDEDDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGVRSR 423 LIDEDDV AGHAASVG+V+ +Q+YYLMSRGIS+ EAE LVI GFL PV+ E+P+E V+ + Sbjct: 365 LIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQ 424 Query: 424 LQDLVESKLGR 434 L++++E K+ + Sbjct: 425 LREVIERKVSK 435 >SP0868 [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component Length = 420 Score = 300 bits (768), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 172/427 (40%), Positives = 254/427 (59%), Gaps = 15/427 (3%) Query: 12 DDLCAWSRAKAEPQWLLEQRLQALKQAENLKLPEVEKMKLERWDIYEHGDYKAENMWPGL 71 +++ +S AEP WL + R +A + E L+LP +E +K RW N+ G Sbjct: 4 ENIKLFSEMHAEPSWLADLRQKAFDKIETLELPVIECVKFHRW-----------NLGDGT 52 Query: 72 QEAHEAVHSLVNFP-VEGGL-IVQHNSDVVYSELSADLAAQGVILTDLHTAAREHGELVQ 129 +E ++ +F ++ L +VQ + V+ + +LA QGV+ TD H+A E EL++ Sbjct: 53 ITENEPSANVPDFTALDHHLKLVQVGTQTVFEQTPVELAEQGVVFTDFHSALEEIPELIE 112 Query: 130 RYLGQAVKPEEHWLSAVHSAVWSGGVFLYIPDGVEVEVPLQAIFY-SSMSGARFAPHILI 188 + +VK ++ L+A H+A ++ G LYIPD VE+ P++ IFY S S F HI+I Sbjct: 113 EFFMSSVKYDDDKLAAYHTAYFNSGAVLYIPDNVEITEPIEGIFYQDSDSNVPFNKHIMI 172 Query: 189 VAGNNSKISYVDNCIS-GREDIKVLHNGVLEVFAGAGSKVQVASVHQLAAPTTDFTQRRA 247 + G NSKISY++ S G K N +EV A +G++V+ A++ +L T + RR Sbjct: 173 IVGKNSKISYLERLESRGEGSDKATANITVEVIARSGAQVKFAAIDRLGENVTAYISRRG 232 Query: 248 VVLADGAVEWIIGEMNNGYTASDTKTLLQGNGSTSDAKVIAVGSGSQKLSYTTQAQHFGR 307 + D +++W IG MN G +D + L GNGS +D KV+A+ SG Q T+ ++G Sbjct: 233 KLGNDASIDWAIGVMNEGNVVADFDSDLIGNGSHADLKVVALSSGRQVQGIDTRVTNYGC 292 Query: 308 SSVSQMITRAVMREEATAIINGITKIEKGATHCDGQQTERILMLSPKARGDANPILLIDE 367 +S+ ++ V+ E+AT NGI I KGA D QQ R+LMLS +AR DANPILLIDE Sbjct: 293 NSIGNILQHGVILEKATLTFNGIGHIIKGAKGADAQQESRVLMLSDQARSDANPILLIDE 352 Query: 368 DDVTAGHAASVGQVNEEQIYYLMSRGISRNEAEYLVIFGFLAPVISEIPLEGVRSRLQDL 427 +DVTAGHAAS+GQV+ E +YYLMSRG+ + AE LV+ GFL VI EIP++ VR + Sbjct: 353 NDVTAGHAASIGQVDPEDMYYLMSRGLDKATAERLVVRGFLGSVIVEIPVKEVRDEMIAT 412 Query: 428 VESKLGR 434 +E KL + Sbjct: 413 IEEKLSK 419 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,262,914 Number of extensions: 1339858 Number of successful extensions: 5281 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 5169 Number of HSP's successfully gapped: 81 Length of query: 440 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 331 Effective length of database: 25,807,025 Effective search space: 8542125275 Effective search space used: 8542125275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)